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  5. Ceric.07G002700.1

Ceric.07G002700.1 (VIP5, Ceric.07G002700)


Aliases : VIP5, Ceric.07G002700

Description : component *(VIP5/RTF1) of PAF1C transcription initiation and elongation complex & original description: pacid=50627135 polypeptide=Ceric.07G002700.1.p locus=Ceric.07G002700 ID=Ceric.07G002700.1.v2.1 annot-version=v2.1


Gene families : OG0003007 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003007_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.07G002700.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AT1G61040 VIP5 plus-3 domain-containing protein 0.03 OrthoFinder output from all 47 species
Aob_g02208 VIP5 component *(VIP5/RTF1) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Ehy_g18998 VIP5 component *(VIP5/RTF1) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Lfl_g05525 VIP5 component *(VIP5/RTF1) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Sam_g11242 No alias component *(VIP5/RTF1) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Tin_g03454 VIP5 component *(VIP5/RTF1) of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR004343 Plus-3_dom 274 377
No external refs found!