Ceric.05G041900.1 (RPOA, Ceric.05G041900)

Aliases : RPOA, Ceric.05G041900

Description : core component *(RpoA) of plastid-encoded RNA polymerase & original description: pacid=50577261 polypeptide=Ceric.05G041900.1.p locus=Ceric.05G041900 ID=Ceric.05G041900.1.v2.1 annot-version=v2.1

Gene families : OG0006820 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006820_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.05G041900.1
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
ATCG00740	RPOA	RNA polymerase subunit alpha	0.18	OrthoFinder output from all 47 species
Aev_g02093	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.4	OrthoFinder output from all 47 species
Als_g16097	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.1	OrthoFinder output from all 47 species
Aob_g19924	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.05	OrthoFinder output from all 47 species
Cba_g60899	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.08	OrthoFinder output from all 47 species
Ceric.1Z019700.1	RPOA, Ceric.1Z019700	not classified & original description: pacid=50586392...	0.16	OrthoFinder output from all 47 species
Dcu_g20888	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.05	OrthoFinder output from all 47 species
GSVIVT01024860001	RPOA	DNA-directed RNA polymerase subunit alpha OS=Vitis vinifera	0.08	OrthoFinder output from all 47 species
Gb_17282	RPOA	DNA-directed RNA polymerase subunit alpha OS=Cycas...	0.12	OrthoFinder output from all 47 species
Gb_25929	RPOA	DNA-directed RNA polymerase subunit alpha OS=Cycas...	0.08	OrthoFinder output from all 47 species
Gb_36750	RPOA	RpoA core component plastid-encoded RNA polymerase	0.12	OrthoFinder output from all 47 species
LOC_Os04g16842.1	RPOA, LOC_Os04g16842	RpoA core component plastid-encoded RNA polymerase	0.3	OrthoFinder output from all 47 species
LOC_Os06g39700.1	RPOA, LOC_Os06g39700	RpoA core component plastid-encoded RNA polymerase	0.3	OrthoFinder output from all 47 species
LOC_Os09g07910.1	RPOA, LOC_Os09g07910	DNA-directed RNA polymerase subunit alpha OS=Oryza...	0.1	OrthoFinder output from all 47 species
Lfl_g19118	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.23	OrthoFinder output from all 47 species
Mpzg00720.1	RPOA	RpoA core component plastid-encoded RNA polymerase	0.05	OrthoFinder output from all 47 species
Nbi_g19365	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.15	OrthoFinder output from all 47 species
Pir_g12462	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.22	OrthoFinder output from all 47 species
Sam_g01699	No alias	core component *(RpoA) of plastid-encoded RNA polymerase...	0.13	OrthoFinder output from all 47 species
Solyc00g500157.1.1	RPOA, Solyc00g500157	RpoA core component plastid-encoded RNA polymerase	0.19	OrthoFinder output from all 47 species
Solyc01g017440.1.1	RPOA, Solyc01g017440	DNA-directed RNA polymerase subunit alpha OS=Solanum...	0.24	OrthoFinder output from all 47 species
Solyc08g081560.1.1	RPOA, Solyc08g081560	DNA-directed RNA polymerase subunit alpha OS=Nicotiana...	0.03	OrthoFinder output from all 47 species
Solyc12g035890.3.1	RPOA, Solyc12g035890	DNA-directed RNA polymerase subunit alpha OS=Solanum...	0.05	OrthoFinder output from all 47 species
Spa_g18101	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.11	OrthoFinder output from all 47 species
Tin_g20913	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015995	chlorophyll biosynthetic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011262	DNA-dir_RNA_pol_insert	69	149
IPR011263	DNA-dir_RNA_pol_RpoA/D/Rpb3	36	213
IPR011260	RNAP_asu_C	252	312

External Links

No external refs found!

Ceric.05G041900.1 (RPOA, Ceric.05G041900)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation