1. Home
  2. Species
  3. Ceratopteris richardii
  4. Sequence
  5. Ceric.04G111100.1

Ceric.04G111100.1 (PGGT-I, ATGGT-IB,...)


Aliases : PGGT-I, ATGGT-IB, GGB, Ceric.04G111100

Description : subunit beta of type-I protein prenyltransferase complex & original description: pacid=50630512 polypeptide=Ceric.04G111100.1.p locus=Ceric.04G111100 ID=Ceric.04G111100.1.v2.1 annot-version=v2.1


Gene families : OG0007125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007125_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.04G111100.1

Target Alias Description ECC score Gene Family Method Actions
Mp5g23720.1 PGGT-I, ATGGT-IB, GGB subunit beta of type-I protein prenyltransferase complex 0.02 OrthoFinder output from all 47 species
Zm00001e016911_P003 PGGT-I,... subunit beta of type-I protein prenyltransferase complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001330 PFTB_repeat 239 275
IPR001330 PFTB_repeat 180 223
IPR001330 PFTB_repeat 110 125
IPR001330 PFTB_repeat 292 334
IPR001330 PFTB_repeat 142 170
No external refs found!