Ceric.03G036200.1 (Ceric.03G036200)


Aliases : Ceric.03G036200

Description : not classified & original description: pacid=50571952 polypeptide=Ceric.03G036200.1.p locus=Ceric.03G036200 ID=Ceric.03G036200.1.v2.1 annot-version=v2.1


Gene families : OG0001104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.03G036200.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g117048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07294 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g02569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05278 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09139 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0097.g043875 No alias not classified & original description: CDS=257-2656 0.04 OrthoFinder output from all 47 species
Cba_g14176 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g22799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06427 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g15186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019040001 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.01 OrthoFinder output from all 47 species
Gb_32462 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.07 OrthoFinder output from all 47 species
Len_g08870 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g12482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01326 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08931 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17969 CRM3, HCF152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56357 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017150 No alias not classified & original description: CDS=1-2094 0.04 OrthoFinder output from all 47 species
Sam_g09085 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10479 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g25243 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g27171 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g065510.1.1 Solyc02g065510 Pentatricopeptide repeat-containing protein At5g66631... 0.02 OrthoFinder output from all 47 species
Spa_g17204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11870 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 530 578
IPR002885 Pentatricopeptide_repeat 601 647
IPR002885 Pentatricopeptide_repeat 267 321
IPR002885 Pentatricopeptide_repeat 173 222
No external refs found!