Ceric.02G070500.1 (FIB1, ATFIB1, ATFBR1,...)

Aliases : FIB1, ATFIB1, ATFBR1, FBR1, SKIP7, Ceric.02G070500

Description : methyltransferase component *(Nop1/fibrillarin) of snoRNP rRNA methylation complex & original description: pacid=50584968 polypeptide=Ceric.02G070500.1.p locus=Ceric.02G070500 ID=Ceric.02G070500.1.v2.1 annot-version=v2.1

Gene families : OG0004335 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004335_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.02G070500.1
Cluster	HCCA: Cluster_155

Target	Alias	Description	ECC score	Gene Family Method
AT4G25630	FIB2, ATFIB2	fibrillarin 2	0.05	OrthoFinder output from all 47 species
AT5G52470	FIB1, ATFIB1,...	fibrillarin 1	0.05	OrthoFinder output from all 47 species
Adi_g076310	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.02	OrthoFinder output from all 47 species
Aop_g18685	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.04	OrthoFinder output from all 47 species
Azfi_s0093.g043290	FIB2, ATFIB2	not classified & original description: CDS=212-970	0.04	OrthoFinder output from all 47 species
Cba_g27536	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001049.16	FIB1, ATFIB1,...	RNA processing.RNA modification.rRNA/tRNA...	0.02	OrthoFinder output from all 47 species
Cre02.g077300	FIB2, ATFIB2	RNA processing.RNA modification.rRNA/tRNA...	0.02	OrthoFinder output from all 47 species
Dac_g15986	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.05	OrthoFinder output from all 47 species
Dcu_g15289	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Dde_g03691	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
GSVIVT01028887001	FIB1, ATFIB1,...	RNA processing.RNA modification.rRNA/tRNA...	0.04	OrthoFinder output from all 47 species
Gb_33899	FIB2, ATFIB2	methyltransferase component Nop1/fibrillarin of snoRNP...	0.05	OrthoFinder output from all 47 species
LOC_Os05g08360.1	FIB1, ATFIB1,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.04	OrthoFinder output from all 47 species
MA_124463g0010	FIB2, ATFIB2	methyltransferase component Nop1/fibrillarin of snoRNP...	0.03	OrthoFinder output from all 47 species
Mp2g12880.1	FIB1, ATFIB1,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.06	OrthoFinder output from all 47 species
Nbi_g41181	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Pir_g60296	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.04	OrthoFinder output from all 47 species
Pp3c16_12410V3.1	FIB2, ATFIB2,...	fibrillarin 2	0.01	OrthoFinder output from all 47 species
Pp3c27_4160V3.1	FIB2, ATFIB2, Pp3c27_4160	fibrillarin 2	0.02	OrthoFinder output from all 47 species
Pp3c6_12420V3.1	FIB2, ATFIB2, Pp3c6_12420	fibrillarin 2	0.02	OrthoFinder output from all 47 species
Ppi_g08083	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g016024	FIB2, ATFIB2	not classified & original description: CDS=123-851	0.06	OrthoFinder output from all 47 species
Sam_g13274	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.07	OrthoFinder output from all 47 species
Smo171051	FIB2, ATFIB2	RNA processing.RNA modification.rRNA/tRNA...	0.04	OrthoFinder output from all 47 species
Solyc03g025270.3.1	FIB2, ATFIB2,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.05	OrthoFinder output from all 47 species
Spa_g31178	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.06	OrthoFinder output from all 47 species
Tin_g21591	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Zm00001e023572_P001	FIB1, ATFIB1,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004177	aminopeptidase activity	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
MF	GO:0008235	metalloexopeptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0030145	manganese ion binding	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
MF	GO:0070006	metalloaminopeptidase activity	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000692	Fibrillarin	68	294

External Links

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Ceric.02G070500.1 (FIB1, ATFIB1, ATFBR1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation