Aspi01Gene29472.t1 (Aspi01Gene29472)

Aliases : Aspi01Gene29472

Description : basal transcription factor *(TFIa/RRN3) & original description: none

Gene families : OG0004620 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004620_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene29472.t1
Cluster	HCCA: Cluster_138

Target	Alias	Description	ECC score	Gene Family Method	Actions
LOC_Os06g47350.2	LOC_Os06g47350	basal transcription factor (TFIa/RRN3)	0.04	OrthoFinder output from all 47 species
Solyc02g082340.3.1	Solyc02g082340	basal transcription factor (TFIa/RRN3)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0001181	RNA polymerase I general transcription initiation factor activity	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	None	Extended
BP	GO:0006361	transcription initiation at RNA polymerase I promoter	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140223	general transcription initiation factor activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007991	RNA_pol_I_trans_ini_fac_RRN3	1	177

External Links

No external refs found!

Aspi01Gene29472.t1 (Aspi01Gene29472)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation