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  5. Dcu_g45248

Dcu_g45248


Description : scaffold factor *(COILIN) of Cajal body formation & original description: none


Gene families : OG0006961 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006961_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g45248
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AT1G13030 No alias sphere organelles protein-related 0.03 OrthoFinder output from all 47 species
Aob_g32147 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.04 OrthoFinder output from all 47 species
Aop_g09840 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.04 OrthoFinder output from all 47 species
Ceric.31G019000.1 Ceric.31G019000 scaffold factor *(COILIN) of Cajal body formation &... 0.04 OrthoFinder output from all 47 species
Cre13.g592400 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g22884 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.03 OrthoFinder output from all 47 species
LOC_Os12g19040.1 LOC_Os12g19040 Coilin OS=Arabidopsis thaliana (sp|q8rwk8|coil_arath : 137.0) 0.03 OrthoFinder output from all 47 species
Sam_g16616 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.04 OrthoFinder output from all 47 species
Solyc05g013740.3.1 Solyc05g013740 Coilin OS=Arabidopsis thaliana (sp|q8rwk8|coil_arath : 162.0) 0.03 OrthoFinder output from all 47 species
Zm00001e040792_P001 Zm00001e040792 Coilin OS=Arabidopsis thaliana (sp|q8rwk8|coil_arath : 220.0) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!