Dcu_g40728

Description : component *(uS6c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0003772 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003772_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g40728
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00220150	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.09	OrthoFinder output from all 47 species
AT1G64510	No alias	Translation elongation factor EF1B/ribosomal protein S6...	0.13	OrthoFinder output from all 47 species
Adi_g019564	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aev_g04389	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ala_g02976	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Als_g05365	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Als_g19098	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Aob_g08781	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Aop_g30964	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Azfi_s0051.g031290	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Cba_g26011	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.10G083400.1	Ceric.10G083400	component *(uS6c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ceric.32G022300.1	Ceric.32G022300	component *(uS6c) of small plastid ribosomal-subunit...	0.18	OrthoFinder output from all 47 species
Cre12.g520600	No alias	Protein biosynthesis.organelle translation...	0.12	OrthoFinder output from all 47 species
Dac_g02644	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Dde_g06910	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Ehy_g04427	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
GSVIVT01019593001	No alias	Protein biosynthesis.organelle translation...	0.11	OrthoFinder output from all 47 species
Gb_07402	No alias	component psRPS6 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Gb_07403	No alias	component psRPS6 of small ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
LOC_Os03g62630.1	LOC_Os03g62630	component psRPS6 of small ribosomal subunit proteome	0.14	OrthoFinder output from all 47 species
Len_g38836	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Lfl_g06876	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
MA_10429326g0010	No alias	component psRPS6 of small ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Mp4g07210.1	No alias	component psRPS6 of small ribosomal subunit proteome	0.16	OrthoFinder output from all 47 species
Msp_g00928	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Nbi_g25871	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Ore_g08524	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ore_g16705	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Pir_g00320	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pnu_g10315	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Ppi_g06171	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009778	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Sam_g19470	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Smo58368	No alias	Protein biosynthesis.organelle translation...	0.06	OrthoFinder output from all 47 species
Solyc08g082690.2.1	Solyc08g082690	component psRPS6 of small ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
Spa_g37875	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Tin_g06363	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008942	nitrite reductase [NAD(P)H] activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009538	photosystem I reaction center	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0030145	manganese ion binding	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0098809	nitrite reductase activity	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000529	Ribosomal_S6	129	226

External Links

No external refs found!

Dcu_g40728

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation