- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : NFD03, HMGB3, NFD3
Description : DNA bending architectural protein *(HMG-B) & original description: none
Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00093p00057150 | evm_27.TU.AmTr_v1... | High mobility group B protein 6 OS=Arabidopsis thaliana | 0.1 | OrthoFinder output from all 47 species | |
| AMTR_s00171p00070550 | HMGB6,... | High mobility group B protein 7 OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
| AT2G17560 | NFD4, HMGB4, NFD04 | high mobility group B4 | 0.03 | OrthoFinder output from all 47 species | |
| AT4G11080 | No alias | HMG (high mobility group) box protein | 0.03 | OrthoFinder output from all 47 species | |
| AT4G23800 | No alias | HMG (high mobility group) box protein | 0.08 | OrthoFinder output from all 47 species | |
| Aev_g39525 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g40545 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g04363 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.14 | OrthoFinder output from all 47 species | |
| Ala_g24042 | No alias | not classified & original description: none | 0.12 | OrthoFinder output from all 47 species | |
| Ala_g28166 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.12 | OrthoFinder output from all 47 species | |
| Als_g00483 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Als_g06156 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Als_g10080 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.12 | OrthoFinder output from all 47 species | |
| Als_g13137 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Als_g13580 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Als_g44054 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Aop_g06071 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.08 | OrthoFinder output from all 47 species | |
| Aop_g13958 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Aop_g23124 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Aop_g38218 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Aop_g48668 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.08 | OrthoFinder output from all 47 species | |
| Aspi01Gene15766.t2 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene26055.t1 | NFD03, HMGB3,... | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.03G026600.1 | HMGB6, Ceric.03G026600 | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000553.19 | NFD03, HMGB3, NFD3 | FACT complex subunit SSRP1 OS=Vicia faba | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001234.9 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001339.6 | NFD2, HMG BETA... | No description available | 0.02 | OrthoFinder output from all 47 species | |
| Cre16.g672300 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g07598 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g20756 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g44453 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01019504001 | No alias | High mobility group B protein 13 OS=Arabidopsis thaliana | 0.11 | OrthoFinder output from all 47 species | |
| GSVIVT01034361001 | HMGB6 | High mobility group B protein 7 OS=Arabidopsis thaliana | 0.06 | OrthoFinder output from all 47 species | |
| Gb_00374 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.1 | OrthoFinder output from all 47 species | |
| Gb_32435 | HMGB6 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_34784 | HMGB6 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os02g15810.1 | LOC_Os02g15810 | High mobility group B protein 13 OS=Arabidopsis thaliana... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os08g01100.1 | HMGB6, LOC_Os08g01100 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os09g37910.1 | NFD2, HMG BETA... | HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 99.4) | 0.03 | OrthoFinder output from all 47 species | |
| Len_g04502 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.08 | OrthoFinder output from all 47 species | |
| Len_g21317 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Len_g30940 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Lfl_g05840 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g24536 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.13 | OrthoFinder output from all 47 species | |
| MA_10436440g0030 | NFD03, HMGB3, NFD3 | no hits & (original description: none) | 0.05 | OrthoFinder output from all 47 species | |
| MA_783123g0010 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| MA_86565g0010 | HMGB6 | no hits & (original description: none) | 0.06 | OrthoFinder output from all 47 species | |
| Mp2g12330.1 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.11 | OrthoFinder output from all 47 species | |
| Msp_g01263 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Msp_g38531 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.11 | OrthoFinder output from all 47 species | |
| Nbi_g06088 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.11 | OrthoFinder output from all 47 species | |
| Nbi_g12748 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Nbi_g22023 | NFD4, HMGB4, NFD04 | DNA bending architectural protein *(HMG-B) & original... | 0.11 | OrthoFinder output from all 47 species | |
| Ore_g42111 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g04305 | NFD1, HMGB1 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g17368 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Sam_g27294 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Sam_g31468 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.12 | OrthoFinder output from all 47 species | |
| Sam_g36464 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g40555 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.12 | OrthoFinder output from all 47 species | |
| Smo73858 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g008820.3.1 | HMGB6, Solyc04g008820 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g04270 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g10432 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Spa_g15059 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g00083 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.08 | OrthoFinder output from all 47 species | |
| Tin_g03032 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.09 | OrthoFinder output from all 47 species | |
| Tin_g45467 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.08 | OrthoFinder output from all 47 species | |
| Zm00001e014266_P001 | Zm00001e014266 | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.08 | OrthoFinder output from all 47 species | |
| Zm00001e024274_P002 | HMGB6, Zm00001e024274 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.08 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000444 | MIS12/MIND type complex | IEP | HCCA |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | HCCA |
| MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | HCCA |
| MF | GO:0005085 | guanyl-nucleotide exchange factor activity | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006265 | DNA topological change | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0030234 | enzyme regulator activity | IEP | HCCA |
| MF | GO:0030695 | GTPase regulator activity | IEP | HCCA |
| BP | GO:0051276 | chromosome organization | IEP | HCCA |
| MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | HCCA |
| BP | GO:0071103 | DNA conformation change | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0098772 | molecular function regulator activity | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| MF | GO:0140677 | molecular function activator activity | IEP | HCCA |
| MF | GO:0140678 | molecular function inhibitor activity | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR009071 | HMG_box_dom | 36 | 105 |
| No external refs found! |