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  5. Dcu_g39812

Dcu_g39812


Description : LIM-type transcription factor & original description: none


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g39812
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.LIM... 0.04 OrthoFinder output from all 47 species
AMTR_s00065p00168710 WLIM1,... RNA biosynthesis.transcriptional activation.LIM... 0.05 OrthoFinder output from all 47 species
Adi_g077331 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g098070 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g106596 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02798 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g21791 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27190 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g12127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10089.t1 WLIM1, Aspi01Gene10089 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene16342.t1 Aspi01Gene16342 LIM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0007.g010765 No alias LIM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Cba_g10082 WLIM1 LIM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.07G010100.1 Ceric.07G010100 LIM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.09G007700.1 WLIM1, Ceric.09G007700 LIM-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g13344 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03324 No alias LIM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g05547 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007812001 WLIM1 RNA biosynthesis.transcriptional activation.LIM... 0.05 OrthoFinder output from all 47 species
GSVIVT01019807001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.04 OrthoFinder output from all 47 species
LOC_Os02g42820.1 LOC_Os02g42820 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
LOC_Os04g45010.1 LOC_Os04g45010 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
LOC_Os12g32620.1 WLIM1, LOC_Os12g32620 transcription factor (LIM) 0.04 OrthoFinder output from all 47 species
Len_g02687 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05819 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_10428887g0010 No alias transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Nbi_g21254 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16712 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25515 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04414 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16596 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001741 WLIM1 LIM-type transcription factor & original description: CDS=1-612 0.04 OrthoFinder output from all 47 species
Solyc03g114000.3.1 WLIM1, Solyc03g114000 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Solyc05g049870.3.1 Solyc05g049870 transcription factor (LIM) 0.04 OrthoFinder output from all 47 species
Spa_g53439 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e018310_P001 WLIM1, Zm00001e018310 transcription factor (LIM) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004150 dihydroneopterin aldolase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006760 folic acid-containing compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 60 115
IPR001781 Znf_LIM 157 212
No external refs found!