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  5. Dcu_g36294

Dcu_g36294


Description : exoribonuclease *(RRP6L) & original description: none


Gene families : OG0002027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002027_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g36294
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AT2G32415 No alias Polynucleotidyl transferase, ribonuclease H fold protein... 0.02 OrthoFinder output from all 47 species
AT5G35910 No alias Polynucleotidyl transferase, ribonuclease H fold protein... 0.02 OrthoFinder output from all 47 species
Adi_g023610 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g106051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25691 No alias exoribonuclease *(RRP6L) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01185 No alias exoribonuclease *(RRP6L) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g14628 No alias exoribonuclease *(RRP6L) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G064000.1 Ceric.03G064000 exoribonuclease *(RRP6L) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.19G014700.1 Ceric.19G014700 exoribonuclease *(RRP6L) & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01029953001 No alias RNA processing.RNA decay.exosome complex.associated... 0.05 OrthoFinder output from all 47 species
Gb_34925 No alias exoribonuclease (RRP6L) 0.03 OrthoFinder output from all 47 species
LOC_Os07g32890.1 LOC_Os07g32890 exoribonuclease (RRP6L) 0.03 OrthoFinder output from all 47 species
LOC_Os10g30100.1 LOC_Os10g30100 exoribonuclease (RRP6L) 0.05 OrthoFinder output from all 47 species
Ore_g35759 No alias exoribonuclease *(RRP6L) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20342 No alias exoribonuclease *(RRP6L) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g29907 No alias exoribonuclease *(RRP6L) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g018520.1.1 Solyc10g018520 exoribonuclease (RRP6L) 0.05 OrthoFinder output from all 47 species
Spa_g12919 No alias exoribonuclease *(RRP6L) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g08818 No alias exoribonuclease *(RRP6L) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004727_P001 Zm00001e004727 exoribonuclease (RRP6L) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0008408 3'-5' exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR012588 Exosome-assoc_fac_Rrp6_N 80 160
IPR002121 HRDC_dom 526 593
IPR002562 3'-5'_exonuclease_dom 306 472
No external refs found!