Dcu_g35830 (ATRAB1A, ATRABD2B, RAB1A)

Aliases : ATRAB1A, ATRABD2B, RAB1A

Description : D-class RAB GTPase & original description: none

Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g35830
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
AT4G17530	RAB1C, ATRAB1C, ATRABD2C	RAB GTPase homolog 1C	0.02	OrthoFinder output from all 47 species
AT5G47200	ATRAB1A, ATRABD2B, RAB1A	RAB GTPase homolog 1A	0.02	OrthoFinder output from all 47 species
Adi_g010705	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g013330	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.03G089700.1	RAB1C, ATRAB1C,...	D-class RAB GTPase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.23G069500.1	RAB1C, ATRAB1C,...	D-class RAB GTPase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.39G002700.1	RAB1C, ATRAB1C,...	D-class RAB GTPase & original description:...	0.03	OrthoFinder output from all 47 species
Cre12.g560150	ATRAB1A, ATRABD2B, RAB1A	Vesicle trafficking.regulation of membrane tethering and...	0.04	OrthoFinder output from all 47 species
Mp3g00710.1	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase	0.05	OrthoFinder output from all 47 species
Pir_g63621	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g103370.3.1	ATFP8, RABD1,...	D-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Solyc05g053940.3.1	ATRAB1B, RABD2A,...	D-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Spa_g05573	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e015303_P001	ATRAB1B, RABD2A,...	D-class RAB GTPase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0004788	thiamine diphosphokinase activity	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009229	thiamine diphosphate biosynthetic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016778	diphosphotransferase activity	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0042357	thiamine diphosphate metabolic process	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	HCCA
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0045048	protein insertion into ER membrane	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0051205	protein insertion into membrane	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	59	219

External Links

No external refs found!

Dcu_g35830 (ATRAB1A, ATRABD2B, RAB1A)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation