Dcu_g23921

Description : component *(bL17c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0002243 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002243_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g23921
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
AT3G54210	No alias	Ribosomal protein L17 family protein	0.11	OrthoFinder output from all 47 species
Ala_g36982	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Als_g08091	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Als_g32904	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Aop_g05075	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aspi01Gene15394.t1	Aspi01Gene15394	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0132.g049286	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.31G010800.1	Ceric.31G010800	component *(bL17c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000889.52	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Cre02.g108850	No alias	Protein biosynthesis.organelle translation...	0.1	OrthoFinder output from all 47 species
Dac_g01223	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Dde_g06743	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ehy_g03225	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01037929001	No alias	Protein biosynthesis.organelle translation...	0.09	OrthoFinder output from all 47 species
Gb_36007	No alias	component psRPL17 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
Len_g00984	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Lfl_g00441	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Lfl_g31145	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
MA_263166g0010	No alias	50S ribosomal protein L17, chloroplastic OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp8g05860.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.13	OrthoFinder output from all 47 species
Msp_g20377	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Nbi_g05141	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ore_g05442	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ore_g31023	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Pir_g36278	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Pp3c12_10340V3.1	Pp3c12_10340	Ribosomal protein L17 family protein	0.03	OrthoFinder output from all 47 species
Pp3c13_21730V3.1	Pp3c13_21730	Ribosomal protein L17 family protein	0.06	OrthoFinder output from all 47 species
Pp3c3_12090V3.1	Pp3c3_12090	Ribosomal protein L17 family protein	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000799	No alias	not classified & original description: CDS=1-519	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g015014	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Sam_g11817	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Solyc06g082750.3.1	Solyc06g082750	component psRPL17 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Solyc06g082760.4.1	Solyc06g082760	component psRPL17 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Spa_g04290	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Spa_g04291	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Tin_g03061	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Zm00001e011784_P001	Zm00001e011784	component psRPL17 of large ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0004499	N,N-dimethylaniline monooxygenase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008942	nitrite reductase [NAD(P)H] activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	HCCA
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0030145	manganese ion binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0050661	NADP binding	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0098809	nitrite reductase activity	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000456	Ribosomal_L17	94	190

External Links

No external refs found!

Dcu_g23921

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation