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  5. Dcu_g20317

Dcu_g20317


Description : protein involved in PS-II assembly *(Psb33) & original description: none


Gene families : OG0003633 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003633_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g20317
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00029990 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.11 OrthoFinder output from all 47 species
AT1G71500 No alias Rieske (2Fe-2S) domain-containing protein 0.08 OrthoFinder output from all 47 species
Adi_g025805 No alias protein involved in PS-II assembly *(Psb33) & original... 0.08 OrthoFinder output from all 47 species
Aev_g09772 No alias protein involved in PS-II assembly *(Psb33) & original... 0.04 OrthoFinder output from all 47 species
Ala_g01051 No alias protein involved in PS-II assembly *(Psb33) & original... 0.1 OrthoFinder output from all 47 species
Ala_g12430 No alias protein involved in PS-II assembly *(Psb33) & original... 0.06 OrthoFinder output from all 47 species
Als_g08451 No alias protein involved in PS-II assembly *(Psb33) & original... 0.03 OrthoFinder output from all 47 species
Als_g11770 No alias protein involved in PS-II assembly *(Psb33) & original... 0.06 OrthoFinder output from all 47 species
Aob_g00988 No alias protein involved in PS-II assembly *(Psb33) & original... 0.07 OrthoFinder output from all 47 species
Aop_g06553 No alias protein involved in PS-II assembly *(Psb33) & original... 0.09 OrthoFinder output from all 47 species
Aspi01Gene15023.t1 Aspi01Gene15023 protein involved in PS-II assembly *(Psb33) & original... 0.07 OrthoFinder output from all 47 species
Azfi_s0212.g058145 No alias protein involved in PS-II assembly *(Psb33) & original... 0.06 OrthoFinder output from all 47 species
Cba_g14675 No alias protein involved in PS-II assembly *(Psb33) & original... 0.03 OrthoFinder output from all 47 species
Ceric.16G079700.1 Ceric.16G079700 protein involved in PS-II assembly *(Psb33) & original... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000551.4 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre09.g411200 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Dde_g09027 No alias protein involved in PS-II assembly *(Psb33) & original... 0.06 OrthoFinder output from all 47 species
Ehy_g15961 No alias protein involved in PS-II assembly *(Psb33) & original... 0.08 OrthoFinder output from all 47 species
GSVIVT01036428001 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Gb_17341 No alias Psb33 protein involved in PS-II assembly 0.05 OrthoFinder output from all 47 species
LOC_Os11g13850.2 LOC_Os11g13850 Psb33 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species
Len_g01078 No alias protein involved in PS-II assembly *(Psb33) & original... 0.09 OrthoFinder output from all 47 species
Lfl_g02682 No alias protein involved in PS-II assembly *(Psb33) & original... 0.08 OrthoFinder output from all 47 species
Lfl_g19856 No alias protein involved in PS-II assembly *(Psb33) & original... 0.06 OrthoFinder output from all 47 species
Lfl_g29593 No alias protein involved in PS-II assembly *(Psb33) & original... 0.03 OrthoFinder output from all 47 species
Mp1g07060.1 No alias Psb33 protein involved in PS-II assembly 0.02 OrthoFinder output from all 47 species
Msp_g04633 No alias protein involved in PS-II assembly *(Psb33) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g07139 No alias protein involved in PS-II assembly *(Psb33) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g08638 No alias protein involved in PS-II assembly *(Psb33) & original... 0.04 OrthoFinder output from all 47 species
Ore_g30344 No alias protein involved in PS-II assembly *(Psb33) & original... 0.1 OrthoFinder output from all 47 species
Pir_g11115 No alias protein involved in PS-II assembly *(Psb33) & original... 0.1 OrthoFinder output from all 47 species
Ppi_g01970 No alias protein involved in PS-II assembly *(Psb33) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g30084 No alias protein involved in PS-II assembly *(Psb33) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007893 No alias protein involved in PS-II assembly *(Psb33) & original... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014902 No alias protein involved in PS-II assembly *(Psb33) & original... 0.04 OrthoFinder output from all 47 species
Sam_g08540 No alias protein involved in PS-II assembly *(Psb33) & original... 0.05 OrthoFinder output from all 47 species
Sam_g12460 No alias protein involved in PS-II assembly *(Psb33) & original... 0.02 OrthoFinder output from all 47 species
Solyc11g042640.2.1 Solyc11g042640 Psb33 protein involved in PS-II assembly 0.12 OrthoFinder output from all 47 species
Spa_g09786 No alias protein involved in PS-II assembly *(Psb33) & original... 0.07 OrthoFinder output from all 47 species
Tin_g01591 No alias protein involved in PS-II assembly *(Psb33) & original... 0.09 OrthoFinder output from all 47 species
Zm00001e018788_P001 Zm00001e018788 Psb33 protein involved in PS-II assembly 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR012748 Rieske-like_NirD 114 226
No external refs found!