1. Home
  2. Species
  3. Dicranopteris curranii
  4. Sequence
  5. Dcu_g17086

Dcu_g17086 (PAB2, PABP2, ATPAB2)


Aliases : PAB2, PABP2, ATPAB2

Description : not classified & original description: none


Gene families : OG0004397 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004397_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g17086

Target Alias Description ECC score Gene Family Method Actions
Ala_g02645 PAB2, PABP2, ATPAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01956 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g14198 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Cba_g01318 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G030500.1 PAB1, Ceric.03G030500 not classified & original description: pacid=50572066... 0.07 OrthoFinder output from all 47 species
Dac_g22253 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06122 PAB6 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_17348 PAB6 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Len_g11847 PAB1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g11431 PAB2, PABP2, ATPAB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_91352g0010 ATRBP45C no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g43779 PAB1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g13976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g22903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29710 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g04608 PABP4, PAB4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g12301 PAB1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0030527 structural constituent of chromatin IEP HCCA
CC GO:0030684 preribosome IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 1 53
IPR000504 RRM_dom 70 141
No external refs found!