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  5. Dcu_g15285

Dcu_g15285 (HCF107)


Aliases : HCF107

Description : plastidial transcript stability factor *(HCF107) & original description: none


Gene families : OG0005071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g15285
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
AT3G17040 HCF107 high chlorophyll fluorescent 107 0.03 OrthoFinder output from all 47 species
Cre09.g416200 No alias RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
Ppi_g05265 HCF107 plastidial transcript stability factor *(HCF107) &... 0.05 OrthoFinder output from all 47 species
Sam_g29813 No alias plastidial transcript stability factor *(HCF107) &... 0.03 OrthoFinder output from all 47 species
Solyc04g009020.4.1 HCF107, Solyc04g009020 plastidial RNA transcript stability factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003856 3-dehydroquinate synthase activity IEP HCCA
MF GO:0004134 4-alpha-glucanotransferase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004556 alpha-amylase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR019734 TPR_repeat 469 497
IPR019734 TPR_repeat 198 225
No external refs found!