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  5. Dcu_g14989

Dcu_g14989


Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g14989
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
Aob_g01899 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20309 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18212 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g29941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014467 No alias not classified & original description: CDS=1-2058 0.04 OrthoFinder output from all 47 species
Zm00001e015994_P001 Zm00001e015994 Pentatricopeptide repeat-containing protein At2g13420,... 0.03 OrthoFinder output from all 47 species
Zm00001e021940_P001 Zm00001e021940 Pentatricopeptide repeat-containing protein At5g18390,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 364 413
IPR002885 Pentatricopeptide_repeat 434 477
IPR002885 Pentatricopeptide_repeat 259 308
IPR002885 Pentatricopeptide_repeat 189 238
IPR002885 Pentatricopeptide_repeat 326 358
IPR002885 Pentatricopeptide_repeat 150 182
No external refs found!