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  5. Dcu_g12341

Dcu_g12341


Description : scaffold nucleoporin of nuclear pore complex *(NUP205) & original description: none


Gene families : OG0003848 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003848_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g12341

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00040040 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.05 OrthoFinder output from all 47 species
Adi_g011594 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.06 OrthoFinder output from all 47 species
Aev_g33320 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.05 OrthoFinder output from all 47 species
Ala_g30488 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.06 OrthoFinder output from all 47 species
Als_g05767 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.05 OrthoFinder output from all 47 species
Aob_g23782 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.05 OrthoFinder output from all 47 species
Aop_g13792 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.06 OrthoFinder output from all 47 species
Ceric.36G007000.1 Ceric.36G007000 scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000880.31 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre13.g578100 No alias No description available 0.06 OrthoFinder output from all 47 species
Dac_g01801 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Dde_g01776 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.06 OrthoFinder output from all 47 species
Ehy_g07967 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01015528001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.05 OrthoFinder output from all 47 species
Gb_31636 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.08 OrthoFinder output from all 47 species
LOC_Os02g10790.1 LOC_Os02g10790 NUP205 scaffold nucleoporin of nuclear pore complex 0.09 OrthoFinder output from all 47 species
LOC_Os02g10794.1 LOC_Os02g10794 Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g12161 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.07 OrthoFinder output from all 47 species
Lfl_g03521 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.06 OrthoFinder output from all 47 species
MA_102119g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_10430391g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10433042g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_23099g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
MA_585707g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp6g01090.1 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Nbi_g02508 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.02 OrthoFinder output from all 47 species
Ore_g17338 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.1 OrthoFinder output from all 47 species
Pir_g61394 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Ppi_g08343 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.05 OrthoFinder output from all 47 species
Smo439663 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Solyc12g006480.2.1 Solyc12g006480 NUP205 scaffold nucleoporin of nuclear pore complex 0.08 OrthoFinder output from all 47 species
Spa_g06176 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.04 OrthoFinder output from all 47 species
Tin_g04761 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.07 OrthoFinder output from all 47 species
Zm00001e014006_P001 Zm00001e014006 NUP205 scaffold nucleoporin of nuclear pore complex 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR021827 Nup186/Nup192/Nup205 24 1636
No external refs found!