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  5. Dcu_g10701

Dcu_g10701 (ATRBP47C, RBP47C)


Aliases : ATRBP47C, RBP47C

Description : not classified & original description: none


Gene families : OG0004397 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004397_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g10701

Target Alias Description ECC score Gene Family Method Actions
Adi_g011602 PAB2, PABP2, ATPAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01956 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g14198 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Cba_g01318 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G030500.1 PAB1, Ceric.03G030500 not classified & original description: pacid=50572066... 0.07 OrthoFinder output from all 47 species
Dac_g22253 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06122 PAB6 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_17348 PAB6 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Len_g11847 PAB1 not classified & original description: none 0.1 OrthoFinder output from all 47 species
Lfl_g11431 PAB2, PABP2, ATPAB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_91352g0010 ATRBP45C no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g43779 PAB1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g44267 ATRBP47C', RBP47C' not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12466 GR-RBP4, GRP4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g22903 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g29710 No alias not classified & original description: none 0.13 OrthoFinder output from all 47 species
Spa_g04608 PABP4, PAB4 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 384 453
IPR000504 RRM_dom 470 541
No external refs found!