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  5. Dcu_g10343

Dcu_g10343 (RAD4, ATRAD4)


Aliases : RAD4, ATRAD4

Description : DNA repair protein *(XPC) & original description: none


Gene families : OG0004861 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004861_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g10343

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00163020 RAD4, ATRAD4,... DNA damage response.DNA repair mechanisms.nucleotide... 0.02 OrthoFinder output from all 47 species
Aev_g16621 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05355 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0132.g049198 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: CDS=51-3317 0.03 OrthoFinder output from all 47 species
GSVIVT01030782001 RAD4, ATRAD4 DNA damage response.DNA repair mechanisms.nucleotide... 0.06 OrthoFinder output from all 47 species
Gb_25624 RAD4, ATRAD4 DNA repair protein (XPC) 0.05 OrthoFinder output from all 47 species
LOC_Os08g33082.1 RAD4, ATRAD4,... DNA repair protein (XPC) 0.02 OrthoFinder output from all 47 species
Ore_g33184 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32348 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc11g011150.2.1 RAD4, ATRAD4,... DNA repair protein (XPC) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR018325 Rad4/PNGase_transGLS-fold 616 775
IPR018326 Rad4_beta-hairpin_dom1 781 830
IPR018328 Rad4_beta-hairpin_dom3 905 977
IPR018327 BHD_2 834 898
No external refs found!