Dcu_g09125

Description : MRM2-type rRNA methyltransferase & original description: none

Gene families : OG0004018 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004018_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g09125
Cluster	HCCA: Cluster_57

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00011p00229900	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
Als_g01128	No alias	MRM2-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g09617	No alias	MRM2-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.33G005200.1	Ceric.33G005200	MRM2-type rRNA methyltransferase & original description:...	0.04	OrthoFinder output from all 47 species
LOC_Os05g49230.1	LOC_Os05g49230	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Lfl_g02148	No alias	MRM2-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
MA_10429557g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_158214g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Ppi_g01371	No alias	MRM2-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g15947	No alias	MRM2-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e032456_P001	Zm00001e032456	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	IEP	HCCA
CC	GO:0000786	nucleosome	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0043484	regulation of RNA splicing	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0050684	regulation of mRNA processing	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1903311	regulation of mRNA metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002877	RNA_MeTrfase_FtsJ_dom	24	203
IPR024576	rRNA_MeTfrase_Spb1_DUF3381	236	384
IPR012920	rRNA_MeTfrase_SPB1-like_C	597	788

External Links

No external refs found!

Dcu_g09125

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation