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  5. Dcu_g08999

Dcu_g08999


Description : HUA2-type transcription factor & original description: none


Gene families : OG0001723 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001723_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g08999
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AT5G08230 No alias Tudor/PWWP/MBT domain-containing protein 0.02 OrthoFinder output from all 47 species
Als_g29120 HUA2 HUA2-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Als_g55166 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g42142 HUA2 HUA2-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20186 HUA2 HUA2-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g72521 HUA2 HUA2-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.33G048700.1 HUA2, Ceric.33G048700 HUA2-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.36G034600.1 HUA2, Ceric.36G034600 HUA2-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Ehy_g05043 HUA2 HUA2-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21799 HUA2 HUA2-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25712 HUA2 HUA2-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01011100001 No alias RNA biosynthesis.transcriptional activation.HUA2... 0.03 OrthoFinder output from all 47 species
GSVIVT01012049001 HUA2 RNA biosynthesis.transcriptional activation.HUA2... 0.06 OrthoFinder output from all 47 species
Gb_39860 HUA2 transcription factor (HUA2) 0.04 OrthoFinder output from all 47 species
LOC_Os08g01054.2 HUA2, LOC_Os08g01054 transcription factor (HUA2) 0.03 OrthoFinder output from all 47 species
Len_g21971 HUA2 HUA2-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
MA_6999g0010 No alias Protein HUA2-LIKE 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Pir_g16391 HUA2 HUA2-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g24326 No alias HUA2-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13358 HUA2 HUA2-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011426 HUA2 HUA2-type transcription factor & original description: CDS=5-4222 0.04 OrthoFinder output from all 47 species
Sam_g30186 No alias HUA2-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Solyc02g014115.1.1 HUA2, Solyc02g014115 transcription factor (HUA2) 0.06 OrthoFinder output from all 47 species
Solyc09g064840.4.1 Solyc09g064840 transcription factor (HUA2) 0.03 OrthoFinder output from all 47 species
Spa_g18277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e024276_P001 HUA2, Zm00001e024276 transcription factor (HUA2) 0.07 OrthoFinder output from all 47 species
Zm00001e029104_P001 HUA2, Zm00001e029104 transcription factor (HUA2) 0.04 OrthoFinder output from all 47 species
Zm00001e038169_P004 Zm00001e038169 transcription factor (HUA2) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000313 PWWP_dom 24 107
IPR006569 CID_dom 985 1108
No external refs found!