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  5. Dcu_g08870

Dcu_g08870


Description : not classified & original description: none


Gene families : OG0007012 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007012_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g08870
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
Dcu_g47934 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g13268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 548 594
IPR046848 E_motif 666 716
IPR002885 Pentatricopeptide_repeat 447 493
IPR002885 Pentatricopeptide_repeat 103 150
IPR002885 Pentatricopeptide_repeat 212 259
IPR002885 Pentatricopeptide_repeat 332 361
IPR002885 Pentatricopeptide_repeat 423 446
IPR002885 Pentatricopeptide_repeat 522 542
IPR002885 Pentatricopeptide_repeat 622 646
IPR002885 Pentatricopeptide_repeat 304 329
No external refs found!