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  5. Dcu_g06475

Dcu_g06475 (VPS11, ATVPS11)


Aliases : VPS11, ATVPS11

Description : component *(VPS11) of HOPS/CORVET membrane tethering complexes & original description: none


Gene families : OG0006628 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006628_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g06475

Target Alias Description ECC score Gene Family Method Actions
AT2G05170 VPS11, ATVPS11 vacuolar protein sorting 11 0.02 OrthoFinder output from all 47 species
Ceric.13G089700.1 VPS11, ATVPS11,... component *(VPS11) of HOPS/CORVET membrane tethering... 0.04 OrthoFinder output from all 47 species
GSVIVT01030049001 VPS11, ATVPS11 Vesicle trafficking.target membrane... 0.07 OrthoFinder output from all 47 species
Gb_07922 VPS11, ATVPS11 Vacuolar protein-sorting-associated protein 11 homolog... 0.02 OrthoFinder output from all 47 species
Gb_07923 VPS11, ATVPS11 component VPS11 of HOPS/CORVET membrane tethering complexes 0.07 OrthoFinder output from all 47 species
Lfl_g11239 VPS11, ATVPS11 component *(VPS11) of HOPS/CORVET membrane tethering... 0.03 OrthoFinder output from all 47 species
MA_20596g0020 VPS11, ATVPS11 component VPS11 of HOPS/CORVET membrane tethering complexes 0.06 OrthoFinder output from all 47 species
Mp3g04110.1 VPS11, ATVPS11 component VPS11 of HOPS/CORVET membrane tethering complexes 0.05 OrthoFinder output from all 47 species
Ore_g30507 VPS11, ATVPS11 component *(VPS11) of HOPS/CORVET membrane tethering... 0.03 OrthoFinder output from all 47 species
Solyc06g065170.4.1 VPS11, ATVPS11,... component VPS11 of HOPS/CORVET membrane tethering complexes 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 876 911
IPR024763 VPS11_C 915 959
IPR000547 Clathrin_H-chain/VPS_repeat 398 524
No external refs found!