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  5. Dcu_g05843

Dcu_g05843


Description : scaffold component *(GANP/SAC3) of TREX-2 mRNP trafficking complex & original description: none


Gene families : OG0001595 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001595_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g05843

Target Alias Description ECC score Gene Family Method Actions
AT3G06290 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.02 OrthoFinder output from all 47 species
Aob_g16280 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.04 OrthoFinder output from all 47 species
Aspi01Gene27224.t1 Aspi01Gene27224 scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Azfi_s0682.g082025 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.05 OrthoFinder output from all 47 species
Cba_g62248 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Ceric.08G063500.1 Ceric.08G063500 scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.07 OrthoFinder output from all 47 species
Cre02.g143600 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
Dde_g50320 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
GSVIVT01017853001 No alias RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
LOC_Os07g45160.1 LOC_Os07g45160 scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.02 OrthoFinder output from all 47 species
MA_10433102g0010 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.04 OrthoFinder output from all 47 species
MA_10433322g0010 No alias SAC3 family protein B OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Mp1g09900.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.03 OrthoFinder output from all 47 species
Pir_g16631 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Ppi_g14323 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.08 OrthoFinder output from all 47 species
Solyc12g035670.3.1 Solyc12g035670 scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.07 OrthoFinder output from all 47 species
Tin_g09793 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005062 SAC3/GANP/THP3_conserved 362 655
No external refs found!