Description : scaffold component *(GANP/SAC3) of TREX-2 mRNP trafficking complex & original description: none
Gene families : OG0001595 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001595_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G06290 | No alias | SAC3/GANP/Nin1/mts3/eIF-3 p25 family | 0.02 | OrthoFinder output from all 47 species | |
Aob_g16280 | No alias | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene27224.t1 | Aspi01Gene27224 | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0682.g082025 | No alias | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.05 | OrthoFinder output from all 47 species | |
Cba_g62248 | No alias | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.08G063500.1 | Ceric.08G063500 | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.07 | OrthoFinder output from all 47 species | |
Cre02.g143600 | No alias | RNA processing.messenger ribonucleoprotein particle... | 0.02 | OrthoFinder output from all 47 species | |
Dde_g50320 | No alias | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01017853001 | No alias | RNA processing.messenger ribonucleoprotein particle... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os07g45160.1 | LOC_Os07g45160 | scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex | 0.02 | OrthoFinder output from all 47 species | |
MA_10433102g0010 | No alias | scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex | 0.04 | OrthoFinder output from all 47 species | |
MA_10433322g0010 | No alias | SAC3 family protein B OS=Arabidopsis thaliana... | 0.06 | OrthoFinder output from all 47 species | |
Mp1g09900.1 | No alias | scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex | 0.03 | OrthoFinder output from all 47 species | |
Pir_g16631 | No alias | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g14323 | No alias | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.08 | OrthoFinder output from all 47 species | |
Solyc12g035670.3.1 | Solyc12g035670 | scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex | 0.07 | OrthoFinder output from all 47 species | |
Tin_g09793 | No alias | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
CC | GO:0005643 | nuclear pore | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0051169 | nuclear transport | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005062 | SAC3/GANP/THP3_conserved | 362 | 655 |
No external refs found! |