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  5. Dcu_g03224

Dcu_g03224


Description : component *(TRA1) of SAGA transcription co-activator complex & original description: none


Gene families : OG0002090 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002090_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g03224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00268p00016240 evm_27.TU.AmTr_v1... Protein modification.phosphorylation.atypical kinase... 0.06 OrthoFinder output from all 47 species
AMTR_s03799p00000720 evm_27.TU.AmTr_v1... No description available 0.07 OrthoFinder output from all 47 species
AT2G17930 No alias Phosphatidylinositol 3- and 4-kinase family protein with... 0.11 OrthoFinder output from all 47 species
AT4G36080 No alias phosphotransferases, alcohol group as... 0.1 OrthoFinder output from all 47 species
Adi_g012013 No alias component *(TRA1) of SAGA transcription co-activator... 0.09 OrthoFinder output from all 47 species
Aev_g05547 No alias component *(TRA1) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Ala_g11954 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Als_g07336 No alias component *(TRA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Als_g20278 No alias component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Aob_g32646 No alias component *(TRA1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Aop_g10616 No alias component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Azfi_s0051.g031225 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ceric.07G020000.1 Ceric.07G020000 component *(TRA1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021537.68 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre02.g088750 No alias Protein modification.phosphorylation.atypical kinase... 0.02 OrthoFinder output from all 47 species
Dde_g21159 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ehy_g01717 No alias component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
GSVIVT01018783001 No alias Protein modification.phosphorylation.atypical kinase... 0.11 OrthoFinder output from all 47 species
LOC_Os07g45064.1 LOC_Os07g45064 component TRA1 of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
LOC_Os07g45070.1 LOC_Os07g45070 component TRA1 of SAGA transcription co-activator complex 0.06 OrthoFinder output from all 47 species
LOC_Os07g45074.1 LOC_Os07g45074 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Len_g40192 No alias component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Lfl_g36110 No alias component *(TRA1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
MA_10427352g0010 No alias component TRA1 of SAGA transcription co-activator complex 0.12 OrthoFinder output from all 47 species
MA_10427352g0020 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
MA_10430300g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_158845g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_3337g0010 No alias protein kinase (PIKK) 0.02 OrthoFinder output from all 47 species
Mp5g23620.1 No alias component TRA1 of SAGA transcription co-activator... 0.08 OrthoFinder output from all 47 species
Msp_g31775 No alias component *(TRA1) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Nbi_g03878 No alias component *(TRA1) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Ore_g38151 No alias component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ppi_g39737 No alias component *(TRA1) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Sam_g50512 No alias component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Solyc02g083780.3.1 Solyc02g083780 protein kinase (PIKK) 0.03 OrthoFinder output from all 47 species
Solyc02g083900.3.1 Solyc02g083900 component TRA1 of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Spa_g25856 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Zm00001e035713_P005 Zm00001e035713 component TRA1 of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR046807 Tra1_central 249 805
IPR003151 PIK-rel_kinase_FAT 2806 3144
IPR003152 FATC_dom 3860 3889
IPR046805 Tra1_ring 817 2662
IPR000403 PI3/4_kinase_cat_dom 3556 3802
No external refs found!