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  5. Dcu_g03210

Dcu_g03210


Description : not classified & original description: none


Gene families : OG0002734 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002734_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g03210
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00173p00060580 evm_27.TU.AmTr_v1... Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT1G77800 No alias PHD finger family protein 0.08 OrthoFinder output from all 47 species
Ala_g06882 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14225 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g29424 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g69981 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35511.t1 Aspi01Gene35511 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g009840 No alias not classified & original description: CDS=194-4429 0.03 OrthoFinder output from all 47 species
Ceric.29G080500.1 Ceric.29G080500 not classified & original description: pacid=50624681... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021348.79 ATX3, SDG14 Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Ehy_g15953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008944001 No alias Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Gb_12353 No alias Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
LOC_Os02g52960.1 LOC_Os02g52960 Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os06g10690.1 LOC_Os06g10690 Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Len_g29830 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10435451g0030 No alias Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Msp_g14549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0138.g022590 No alias not classified & original description: CDS=632-4768 0.07 OrthoFinder output from all 47 species
Sam_g14038 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Smo407186 No alias Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Spa_g06993 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13964 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e023803_P003 Zm00001e023803 Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Zm00001e030795_P001 Zm00001e030795 Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!