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Description : component *(Symplekin/Pta1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none
Gene families : OG0002204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002204_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00007p00088050 | ESP4,... | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.09 | OrthoFinder output from all 47 species | |
| AT1G27595 | No alias | CONTAINS InterPro DOMAIN/s: Symplekin tight junction... | 0.03 | OrthoFinder output from all 47 species | |
| AT5G01400 | ESP4 | HEAT repeat-containing protein | 0.09 | OrthoFinder output from all 47 species | |
| Adi_g081403 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g04252 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.07 | OrthoFinder output from all 47 species | |
| Ala_g06408 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g09476 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.06 | OrthoFinder output from all 47 species | |
| Als_g23718 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.13 | OrthoFinder output from all 47 species | |
| Als_g63126 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.06 | OrthoFinder output from all 47 species | |
| Aop_g08267 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g22132 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene50297.t1 | Aspi01Gene50297 | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0006.g010125 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.05 | OrthoFinder output from all 47 species | |
| Cba_g36378 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.01G050700.1 | Ceric.01G050700 | component *(Symplekin/Pta1) of Cleavage and... | 0.11 | OrthoFinder output from all 47 species | |
| Ceric.12G019100.1 | ESP4, Ceric.12G019100 | component *(Symplekin/Pta1) of Cleavage and... | 0.1 | OrthoFinder output from all 47 species | |
| Dac_g01061 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.06 | OrthoFinder output from all 47 species | |
| Dac_g06615 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g04949 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g19241 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01009243001 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01011157001 | ESP4 | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.08 | OrthoFinder output from all 47 species | |
| Gb_23976 | ESP4 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.06 | OrthoFinder output from all 47 species | |
| Gb_24672 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g49940.1 | LOC_Os01g49940 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os07g49320.1 | ESP4, LOC_Os07g49320 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g19439 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g06265 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.05 | OrthoFinder output from all 47 species | |
| MA_10426054g0010 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.05 | OrthoFinder output from all 47 species | |
| MA_10426054g0020 | ESP4 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.06 | OrthoFinder output from all 47 species | |
| MA_10430259g0010 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10432378g0010 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.08 | OrthoFinder output from all 47 species | |
| MA_433916g0010 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
| Mp6g03410.1 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.07 | OrthoFinder output from all 47 species | |
| Msp_g14027 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.07 | OrthoFinder output from all 47 species | |
| Msp_g24896 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g27266 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.06 | OrthoFinder output from all 47 species | |
| Ppi_g15043 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0168.g024262 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g08972 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.06 | OrthoFinder output from all 47 species | |
| Smo442688 | ESP4 | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc04g076900.2.1 | Solyc04g076900 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc04g076910.3.1 | Solyc04g076910 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.08 | OrthoFinder output from all 47 species | |
| Solyc09g005330.3.1 | ESP4, Solyc09g005330 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc09g005340.3.1 | ESP4, Solyc09g005340 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g15317 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g06134 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e020082_P004 | Zm00001e020082 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.1 | OrthoFinder output from all 47 species | |
| Zm00001e035946_P001 | ESP4, Zm00001e035946 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.09 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000139 | Golgi membrane | IEP | HCCA |
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003724 | RNA helicase activity | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0004402 | histone acetyltransferase activity | IEP | HCCA |
| MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
| BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
| BP | GO:0006473 | protein acetylation | IEP | HCCA |
| BP | GO:0006475 | internal protein amino acid acetylation | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| BP | GO:0006906 | vesicle fusion | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| BP | GO:0007030 | Golgi organization | IEP | HCCA |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| MF | GO:0008186 | ATP-dependent activity, acting on RNA | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0016050 | vesicle organization | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016407 | acetyltransferase activity | IEP | HCCA |
| MF | GO:0016410 | N-acyltransferase activity | IEP | HCCA |
| BP | GO:0016570 | histone modification | IEP | HCCA |
| BP | GO:0016573 | histone acetylation | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | HCCA |
| BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | HCCA |
| BP | GO:0018394 | peptidyl-lysine acetylation | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
| MF | GO:0030527 | structural constituent of chromatin | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| CC | GO:0031090 | organelle membrane | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | HCCA |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043543 | protein acylation | IEP | HCCA |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| BP | GO:0048280 | vesicle fusion with Golgi apparatus | IEP | HCCA |
| BP | GO:0048284 | organelle fusion | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0061024 | membrane organization | IEP | HCCA |
| BP | GO:0061025 | membrane fusion | IEP | HCCA |
| MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0090174 | organelle membrane fusion | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| CC | GO:0098588 | bounding membrane of organelle | IEP | HCCA |
| MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |