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  5. Spa_g57103

Spa_g57103


Description : not classified & original description: none


Gene families : OG0005726 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005726_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g57103

Target Alias Description ECC score Gene Family Method Actions
AT4G30150 No alias CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA... 0.02 OrthoFinder output from all 47 species
Aev_g14440 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g10986 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01024104001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_18575 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os03g10600.1 LOC_Os03g10600 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10266689g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10430464g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sam_g42172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo418814 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc10g054860.2.1 Solyc10g054860 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e000753_P001 Zm00001e000753 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR018849 Urb2/Npa2_C 2024 2260
No external refs found!