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  5. Spa_g54890

Spa_g54890 (CP24, LHCB6)


Aliases : CP24, LHCB6

Description : component *(LHCb6) of LHC-II complex & original description: none


Gene families : OG0003880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g54890
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00268360 CP24, LHCB6,... Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder output from all 47 species
AT1G15820 CP24, LHCB6 light harvesting complex photosystem II subunit 6 0.08 OrthoFinder output from all 47 species
Adi_g050814 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Adi_g084972 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.12 OrthoFinder output from all 47 species
Aev_g46568 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g04130 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g14893 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Als_g04793 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08113 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g08786 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g16767 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g01085 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g13957 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene36777.t1 CP24, LHCB6,... component *(LHCb6) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene60192.t1 CP24, LHCB6,... component *(LHCb6) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0186.g056695 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original... 0.06 OrthoFinder output from all 47 species
Cba_g06222 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07812 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.08G051300.1 CP24, LHCB6,... component *(LHCb6) of LHC-II complex & original... 0.12 OrthoFinder output from all 47 species
Ceric.26G015400.1 CP24, LHCB6,... component *(LHCb6) of LHC-II complex & original... 0.07 OrthoFinder output from all 47 species
Dac_g26480 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g02505 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g09088 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g30591 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g16061 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g17973 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g05483 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01029789001 CP24, LHCB6 Photosynthesis.photophosphorylation.photosystem... 0.08 OrthoFinder output from all 47 species
Gb_27633 CP24, LHCB6 component LHCb6 of LHC-II complex 0.07 OrthoFinder output from all 47 species
LOC_Os04g38410.1 CP24, LHCB6,... component LHCb6 of LHC-II complex 0.07 OrthoFinder output from all 47 species
Len_g14628 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Len_g18838 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Len_g37515 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.11 OrthoFinder output from all 47 species
Mp6g01650.1 CP24, LHCB6 component LHCb6 of LHC-II complex 0.09 OrthoFinder output from all 47 species
Msp_g01460 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.11 OrthoFinder output from all 47 species
Msp_g11766 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.11 OrthoFinder output from all 47 species
Nbi_g03418 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.11 OrthoFinder output from all 47 species
Nbi_g21203 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Ore_g10858 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g01878 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Pnu_g05601 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30781 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Ppi_g54300 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14091 No alias component *(LHCb6) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Smo271833 CP24, LHCB6 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Solyc01g105030.3.1 CP24, LHCB6,... component LHCb6 of LHC-II complex 0.06 OrthoFinder output from all 47 species
Solyc01g105050.3.1 CP24, LHCB6,... component LHCb6 of LHC-II complex 0.08 OrthoFinder output from all 47 species
Spa_g48849 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g54889 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g05852 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g21610 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e006561_P001 CP24, LHCB6,... component LHCb6 of LHC-II complex 0.09 OrthoFinder output from all 47 species
Zm00001e041918_P001 CP24, LHCB6,... component LHCb6 of LHC-II complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010206 photosystem II repair IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030091 protein repair IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 75 251
No external refs found!