1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g53605

Spa_g53605


Description : not classified & original description: none


Gene families : OG0000765 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000765_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g53605

Target Alias Description ECC score Gene Family Method Actions
Adi_g003821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g010531 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015529 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g021586 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g036500 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g076502 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g079450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082596 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g086108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g116879 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g04525 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g11887 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g38670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02349 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22075 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06906 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g13432 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0038.g026330 No alias not classified & original description: CDS=24-1157 0.06 OrthoFinder output from all 47 species
Azfi_s0103.g044678 No alias not classified & original description: CDS=1-1290 0.05 OrthoFinder output from all 47 species
Azfi_s0130.g049013 No alias not classified & original description: CDS=1-1269 0.04 OrthoFinder output from all 47 species
Cba_g06784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g08895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11745 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g13572 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G026700.1 Ceric.01G026700 not classified & original description: pacid=50590774... 0.06 OrthoFinder output from all 47 species
Ceric.02G087700.1 Ceric.02G087700 not classified & original description: pacid=50584452... 0.07 OrthoFinder output from all 47 species
Ceric.14G018200.1 Ceric.14G018200 not classified & original description: pacid=50634515... 0.06 OrthoFinder output from all 47 species
Ceric.25G052900.1 Ceric.25G052900 not classified & original description: pacid=50593857... 0.05 OrthoFinder output from all 47 species
Ceric.31G033800.1 Ceric.31G033800 not classified & original description: pacid=50573729... 0.06 OrthoFinder output from all 47 species
Dac_g01491 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g04186 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g08445 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g10926 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g03771 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g02816 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g03336 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g07225 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g08368 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10932 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18276 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g16705 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Len_g17981 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g21002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g01842 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03054 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g03237 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g36284 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g06404 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g10797 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g01977 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g11270 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11828 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g25637 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g30553 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12855 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12889 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48611 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000161 No alias not classified & original description: CDS=159-1424 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000665 No alias not classified & original description: CDS=1-1275 0.04 OrthoFinder output from all 47 species
Sam_g09744 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g17005 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g17101 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g17133 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g00873 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g02625 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04483 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04560 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g08501 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0032299 ribonuclease H2 complex IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR023210 NADP_OxRdtase_dom 116 429
No external refs found!