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  5. Spa_g51028

Spa_g51028 (Psb27-H1, LPA19)


Aliases : Psb27-H1, LPA19

Description : not classified & original description: none


Gene families : OG0004638 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004638_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g51028
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
Ala_g22474 Psb27-H1, LPA19 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cre02.g073850 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g22123 Psb27-H1, LPA19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g33397 Psb27-H1, LPA19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g34104 Psb27-H1, LPA19 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g37645 Psb27-H1, LPA19 not classified & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os03g53640.1 Psb27-H1, LPA19,... Photosystem II D1 precursor processing protein PSB27-H2,... 0.09 OrthoFinder output from all 47 species
Solyc09g076030.4.1 Psb27-H1, LPA19,... Photosystem II D1 precursor processing protein PSB27-H2,... 0.02 OrthoFinder output from all 47 species
Zm00001e012045_P001 Psb27-H1, LPA19,... Photosystem II D1 precursor processing protein PSB27-H2,... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
BP GO:0010206 photosystem II repair IEA Interproscan
BP GO:0010207 photosystem II assembly IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR025585 PSII_Pbs27 115 235
No external refs found!