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  4. Sequence
  5. Spa_g50990

Spa_g50990


Description : not classified & original description: none


Gene families : OG0000402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g50990
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00203500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
AT4G14920 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.02 OrthoFinder output from all 47 species
Adi_g020053 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g13062 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16047 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g20182 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Ala_g20272 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g23026 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07565 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13559 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene25981.t1 Aspi01Gene25981 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0519.g075228 No alias not classified & original description: CDS=211-3699 0.03 OrthoFinder output from all 47 species
Cba_g16245 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g31776 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G075300.1 Ceric.04G075300 not classified & original description: pacid=50631416... 0.07 OrthoFinder output from all 47 species
Ceric.35G031200.1 Ceric.35G031200 not classified & original description: pacid=50581090... 0.03 OrthoFinder output from all 47 species
Cre08.g386000 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g09002 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Dcu_g16965 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g50149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10038 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014219001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.09 OrthoFinder output from all 47 species
GSVIVT01017972001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.08 OrthoFinder output from all 47 species
Gb_06644 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.08 OrthoFinder output from all 47 species
LOC_Os03g53630.1 LOC_Os03g53630 PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
LOC_Os04g59510.1 LOC_Os04g59510 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
LOC_Os07g07690.1 LOC_Os07g07690 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Len_g47387 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g06765 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
MA_139275g0010 No alias PHD finger transcription factor 0.06 OrthoFinder output from all 47 species
MA_14500g0010 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.11 OrthoFinder output from all 47 species
MA_3931g0010 No alias PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Mp6g21090.2 No alias PHD finger transcription factor 0.1 OrthoFinder output from all 47 species
Msp_g13348 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g13351 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g16226 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g29122 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13767 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g18818 No alias component *(IDM1) of ROS1-recruitment complex & original... 0.09 OrthoFinder output from all 47 species
Pir_g01695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06867 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Pir_g16242 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18645 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g35938 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g01427 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08484 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0245.g026694 No alias not classified & original description: CDS=519-4760 0.03 OrthoFinder output from all 47 species
Sam_g15944 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc09g065340.3.1 Solyc09g065340 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc09g076010.3.1 Solyc09g076010 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Tin_g20194 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g21039 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e005667_P001 Zm00001e005667 PHD finger transcription factor 0.09 OrthoFinder output from all 47 species
Zm00001e012046_P003 Zm00001e012046 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 1104 1155
No external refs found!