Spa_g47543 (AGL16)

Aliases : AGL16

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g47543

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00270400	AGL32, TT16,...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
AMTR_s00010p00264750	AGL30,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AMTR_s00071p00193200	STK, AGL11,...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.03	OrthoFinder output from all 47 species
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.02	OrthoFinder output from all 47 species
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.04	OrthoFinder output from all 47 species
AT4G11880	AGL14	AGAMOUS-like 14	0.02	OrthoFinder output from all 47 species
AT4G24540	AGL24	AGAMOUS-like 24	0.02	OrthoFinder output from all 47 species
Aev_g20345	AGL7, AP1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g42778	AGL2, SEP1	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g32969	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene15809.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene17819.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene17826.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0684.g082058	AGL21	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.07G094900.1	AGL7, AP1,...	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g07325	AGL8, FUL	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g07431	AGL6	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01008139001	AGL2, SEP1	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01008560001	SOC1, AGL20, ATSOC1	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01008806001	PI	RNA biosynthesis.transcriptional activation.MADS box...	0.05	OrthoFinder output from all 47 species
GSVIVT01012110001	AGL32, TT16, ABS	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01012250001	AGL7, AP1	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01022182001	AGL104	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01025945001	STK, AGL11	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01026207001	AGL32, TT16, ABS	RNA biosynthesis.transcriptional activation.MADS box...	0.05	OrthoFinder output from all 47 species
GSVIVT01027577001	AGL6	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01033253001	AGL15	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01035477001	AGL30	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
Gb_15398	PI	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os01g10504.1	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os01g11510.1	LOC_Os01g11510	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os02g45770.1	AGL6, LOC_Os02g45770	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os03g11614.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
LOC_Os06g01890.1	SOC1, AGL20,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os06g11330.1	SVP, AGL22,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os06g23950.1	LOC_Os06g23950	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os06g23980.1	AGL16, LOC_Os06g23980	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species
LOC_Os12g10540.3	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Len_g28933	GL19, AGL19	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g13029	AGL21	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_1090469g0010	SOC1, AGL20, ATSOC1	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_13933g0010	AGL13	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_18048g0010	AGL21	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_19007g0020	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
MA_20467g0020	AGL10, CAL1, CAL	MADS-box transcription factor 6 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
MA_211156g0010	STK, AGL11	no description available(sp\|q93xh4\|mads1_vitvi : 152.0)	0.02	OrthoFinder output from all 47 species
MA_25342g0010	AGL16	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
MA_3200737g0010	AGL24	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_333471g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_347547g0010	SOC1, AGL20, ATSOC1	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_5917g0010	AGL9, SEP3	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_770623g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_8636733g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Msp_g24760	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g11232	AGL14	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g44137	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g18620	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g28969	AGL104	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g33302	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo113962	AGL104	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
Smo69980	AGL67	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
Solyc02g065730.2.1	AGL8, FUL, Solyc02g065730	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc04g005320.3.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Solyc10g044965.1.1	AGL21, Solyc10g044965	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc10g080030.2.1	AGL18, Solyc10g080030	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e000846_P003	AGL4, SEP2,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e003667_P001	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e006950_P001	AGL32, TT16,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e010125_P001	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e012026_P002	AGL7, AP1, Zm00001e012026	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e016529_P004	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e027034_P001	PI, Zm00001e027034	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e027852_P001	AGL62, Zm00001e027852	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e030373_P001	AGL10, CAL1,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e031267_P003	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e033144_P001	AGL29, Zm00001e033144	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e034629_P001	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e038716_P004	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	HCCA
MF	GO:0016843	amine-lyase activity	IEP	HCCA
MF	GO:0016844	strictosidine synthase activity	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
CC	GO:0031012	extracellular matrix	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	137	184
IPR002487	TF_Kbox	212	297

External Links

No external refs found!

Spa_g47543 (AGL16)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation