Spa_g46612


Description : circadian clock factor *(REVEILLE) & original description: none


Gene families : OG0000435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g46612

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272270 LHY1, LHY,... Multi-process regulation.circadian clock.core oscillator... 0.02 OrthoFinder output from all 47 species
Ala_g35636 No alias transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26758 No alias circadian clock factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g33302 No alias transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62177 RVE1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g33824 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01893.t1 Aspi01Gene01893 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16814.t1 Aspi01Gene16814 transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene50880.t1 Aspi01Gene50880 circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g008971 RVE1 transcription factor *(REVEILLE) & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0042.g026930 CCA1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035858 RVE1 transcription factor *(REVEILLE) & original description:... 0.04 OrthoFinder output from all 47 species
Cba_g24529 No alias circadian clock factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g06441 No alias transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g22032 RVE1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18608 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16695 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os06g01670.1 LOC_Os06g01670 transcription factor (MYB-related). REVEILLE circadian... 0.02 OrthoFinder output from all 47 species
Len_g21851 RVE1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44827 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14125 RVE2, CIR1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.03 OrthoFinder output from all 47 species
Ore_g18757 No alias transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g36473 RVE1 transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g32161 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g42013 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04824 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 45 90
No external refs found!