Spa_g43417

Description : not classified & original description: none

Gene families : OG0005850 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005850_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g43417
Cluster	HCCA: Cluster_138

Target	Alias	Description	ECC score	Gene Family Method	Actions
Adi_g058716	No alias	scaffold nucleoporin of nuclear pore complex *(NUP107) &...	0.02	OrthoFinder output from all 47 species
Ore_g16075	No alias	scaffold nucleoporin of nuclear pore complex *(NUP107) &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005643	nuclear pore	IEA	Interproscan
MF	GO:0017056	structural constituent of nuclear pore	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000228	nuclear chromosome	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007252	Nup84/Nup107	117	877

External Links

No external refs found!