Coexpression cluster: Cluster_138 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0071840 cellular component organization or biogenesis 5.76% (11/191) 3.37 0.0 2e-06
GO:0016043 cellular component organization 5.76% (11/191) 3.46 0.0 2e-06
GO:0003676 nucleic acid binding 12.04% (23/191) 1.89 0.0 7e-06
GO:0006260 DNA replication 2.62% (5/191) 5.55 0.0 9e-06
GO:0005488 binding 26.7% (51/191) 1.0 1e-06 4.8e-05
GO:1901363 heterocyclic compound binding 18.32% (35/191) 1.25 1e-06 7.7e-05
GO:0097159 organic cyclic compound binding 18.32% (35/191) 1.25 1e-06 7.7e-05
GO:0090304 nucleic acid metabolic process 5.76% (11/191) 2.66 2e-06 7.8e-05
GO:0003677 DNA binding 6.81% (13/191) 2.33 2e-06 0.000102
GO:0006259 DNA metabolic process 3.14% (6/191) 3.77 6e-06 0.000217
GO:0006139 nucleobase-containing compound metabolic process 6.28% (12/191) 2.31 7e-06 0.000243
GO:0046483 heterocycle metabolic process 6.28% (12/191) 2.18 1.7e-05 0.000502
GO:0003674 molecular_function 36.13% (69/191) 0.67 1.7e-05 0.00052
GO:0006725 cellular aromatic compound metabolic process 6.28% (12/191) 2.15 2.1e-05 0.000559
GO:0140513 nuclear protein-containing complex 2.62% (5/191) 3.88 2.5e-05 0.000582
GO:1901360 organic cyclic compound metabolic process 6.28% (12/191) 2.13 2.4e-05 0.000609
GO:0009987 cellular process 17.28% (33/191) 1.04 5.8e-05 0.001276
GO:0008150 biological_process 21.99% (42/191) 0.86 8.1e-05 0.001703
GO:0071103 DNA conformation change 1.57% (3/191) 5.01 0.000111 0.002211
GO:0140535 intracellular protein-containing complex 2.09% (4/191) 3.86 0.000177 0.003338
GO:0017056 structural constituent of nuclear pore 1.05% (2/191) 6.43 0.000228 0.004099
GO:0065003 protein-containing complex assembly 2.09% (4/191) 3.56 0.00039 0.006391
GO:0032991 protein-containing complex 4.71% (9/191) 2.04 0.000387 0.006627
GO:0043933 protein-containing complex organization 2.09% (4/191) 3.44 0.000537 0.008433
GO:0051276 chromosome organization 1.57% (3/191) 4.23 0.00056 0.008447
GO:0006325 chromatin organization 1.57% (3/191) 4.17 0.000632 0.009159
GO:0005643 nuclear pore 1.05% (2/191) 5.65 0.00071 0.00991
GO:1990234 transferase complex 1.57% (3/191) 3.96 0.000975 0.01186
GO:0032508 DNA duplex unwinding 1.05% (2/191) 5.43 0.000974 0.012244
GO:0032392 DNA geometric change 1.05% (2/191) 5.43 0.000974 0.012244
GO:0022607 cellular component assembly 2.09% (4/191) 3.22 0.000942 0.012685
GO:0034654 nucleobase-containing compound biosynthetic process 2.62% (5/191) 2.63 0.001378 0.016239
GO:0008017 microtubule binding 1.57% (3/191) 3.73 0.001546 0.01766
GO:0032774 RNA biosynthetic process 2.09% (4/191) 3.0 0.001643 0.018213
GO:0019001 guanyl nucleotide binding 3.66% (7/191) 2.04 0.001711 0.018425
GO:0034641 cellular nitrogen compound metabolic process 6.81% (13/191) 1.37 0.001801 0.018863
GO:0015631 tubulin binding 1.57% (3/191) 3.57 0.002127 0.021668
GO:0065007 biological regulation 4.71% (9/191) 1.65 0.002555 0.02535
GO:0017076 purine nucleotide binding 8.38% (16/191) 1.15 0.002629 0.025414
GO:0006996 organelle organization 1.57% (3/191) 3.34 0.003329 0.02728
GO:1903504 regulation of mitotic spindle checkpoint 0.52% (1/191) 8.23 0.003324 0.027849
GO:0031491 nucleosome binding 0.52% (1/191) 8.23 0.003324 0.027849
GO:0008083 growth factor activity 0.52% (1/191) 8.23 0.003324 0.027849
GO:1901976 regulation of cell cycle checkpoint 0.52% (1/191) 8.23 0.003324 0.027849
GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint 0.52% (1/191) 8.23 0.003324 0.027849
GO:0090231 regulation of spindle checkpoint 0.52% (1/191) 8.23 0.003324 0.027849
GO:0018130 heterocycle biosynthetic process 2.62% (5/191) 2.32 0.003474 0.027868
GO:0019438 aromatic compound biosynthetic process 2.62% (5/191) 2.3 0.003674 0.028266
GO:0000166 nucleotide binding 8.38% (16/191) 1.09 0.00389 0.028758
GO:1901265 nucleoside phosphate binding 8.38% (16/191) 1.09 0.00389 0.028758
GO:0051983 regulation of chromosome segregation 0.52% (1/191) 7.23 0.006637 0.028761
GO:0033045 regulation of sister chromatid segregation 0.52% (1/191) 7.23 0.006637 0.028761
GO:0042176 regulation of protein catabolic process 0.52% (1/191) 7.23 0.006637 0.028761
GO:0000228 nuclear chromosome 0.52% (1/191) 7.23 0.006637 0.028761
GO:0009894 regulation of catabolic process 0.52% (1/191) 7.23 0.006637 0.028761
GO:0000502 proteasome complex 0.52% (1/191) 7.23 0.006637 0.028761
GO:0003896 DNA primase activity 0.52% (1/191) 7.23 0.006637 0.028761
GO:0030071 regulation of mitotic metaphase/anaphase transition 0.52% (1/191) 7.23 0.006637 0.028761
GO:1905818 regulation of chromosome separation 0.52% (1/191) 7.23 0.006637 0.028761
GO:0007088 regulation of mitotic nuclear division 0.52% (1/191) 7.23 0.006637 0.028761
GO:0010965 regulation of mitotic sister chromatid separation 0.52% (1/191) 7.23 0.006637 0.028761
GO:0051783 regulation of nuclear division 0.52% (1/191) 7.23 0.006637 0.028761
GO:0000151 ubiquitin ligase complex 0.52% (1/191) 7.23 0.006637 0.028761
GO:0000152 nuclear ubiquitin ligase complex 0.52% (1/191) 7.23 0.006637 0.028761
GO:0005680 anaphase-promoting complex 0.52% (1/191) 7.23 0.006637 0.028761
GO:0007346 regulation of mitotic cell cycle 0.52% (1/191) 7.23 0.006637 0.028761
GO:1901990 regulation of mitotic cell cycle phase transition 0.52% (1/191) 7.23 0.006637 0.028761
GO:1902099 regulation of metaphase/anaphase transition of cell cycle 0.52% (1/191) 7.23 0.006637 0.028761
GO:0033047 regulation of mitotic sister chromatid segregation 0.52% (1/191) 7.23 0.006637 0.028761
GO:0031461 cullin-RING ubiquitin ligase complex 0.52% (1/191) 7.23 0.006637 0.028761
GO:0005762 mitochondrial large ribosomal subunit 0.52% (1/191) 7.23 0.006637 0.028761
GO:0042575 DNA polymerase complex 0.52% (1/191) 7.23 0.006637 0.028761
GO:0006433 prolyl-tRNA aminoacylation 0.52% (1/191) 7.23 0.006637 0.028761
GO:0004827 proline-tRNA ligase activity 0.52% (1/191) 7.23 0.006637 0.028761
GO:0043625 delta DNA polymerase complex 0.52% (1/191) 7.23 0.006637 0.028761
GO:0000315 organellar large ribosomal subunit 0.52% (1/191) 7.23 0.006637 0.028761
GO:0035639 purine ribonucleoside triphosphate binding 7.85% (15/191) 1.14 0.003667 0.028799
GO:0032555 purine ribonucleotide binding 7.85% (15/191) 1.12 0.004079 0.029574
GO:0003924 GTPase activity 2.62% (5/191) 2.26 0.004209 0.029937
GO:0005525 GTP binding 3.14% (6/191) 1.84 0.00707 0.02995
GO:0032561 guanyl ribonucleotide binding 3.14% (6/191) 1.84 0.00707 0.02995
GO:0032553 ribonucleotide binding 7.85% (15/191) 1.11 0.004375 0.030541
GO:0050789 regulation of biological process 4.19% (8/191) 1.51 0.007663 0.032099
GO:0097367 carbohydrate derivative binding 7.85% (15/191) 1.09 0.004934 0.033819
GO:1901362 organic cyclic compound biosynthetic process 2.62% (5/191) 2.19 0.005112 0.034415
GO:0036094 small molecule binding 8.38% (16/191) 1.03 0.005591 0.03513
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.05% (2/191) 4.19 0.005423 0.035252
GO:0044877 protein-containing complex binding 1.05% (2/191) 4.19 0.005423 0.035252
GO:1902494 catalytic complex 2.09% (4/191) 2.51 0.005566 0.035565
GO:0008154 actin polymerization or depolymerization 0.52% (1/191) 6.65 0.009939 0.03603
GO:0045944 positive regulation of transcription by RNA polymerase II 0.52% (1/191) 6.65 0.009939 0.03603
GO:0034243 regulation of transcription elongation by RNA polymerase II 0.52% (1/191) 6.65 0.009939 0.03603
GO:0032968 positive regulation of transcription elongation by RNA polymerase II 0.52% (1/191) 6.65 0.009939 0.03603
GO:0033044 regulation of chromosome organization 0.52% (1/191) 6.65 0.009939 0.03603
GO:0032786 positive regulation of DNA-templated transcription, elongation 0.52% (1/191) 6.65 0.009939 0.03603
GO:0006269 DNA replication, synthesis of RNA primer 0.52% (1/191) 6.65 0.009939 0.03603
GO:0032784 regulation of DNA-templated transcription elongation 0.52% (1/191) 6.65 0.009939 0.03603
GO:0030041 actin filament polymerization 0.52% (1/191) 6.65 0.009939 0.03603
GO:0051258 protein polymerization 0.52% (1/191) 6.65 0.009939 0.03603
GO:0016070 RNA metabolic process 2.62% (5/191) 1.95 0.01011 0.036302
GO:0043168 anion binding 7.85% (15/191) 1.0 0.008799 0.036453
GO:0097747 RNA polymerase activity 1.05% (2/191) 3.68 0.010771 0.037949
GO:0034062 5'-3' RNA polymerase activity 1.05% (2/191) 3.68 0.010771 0.037949
GO:0006338 chromatin remodeling 1.05% (2/191) 3.74 0.009907 0.039733
GO:0043231 intracellular membrane-bounded organelle 2.09% (4/191) 2.28 0.009708 0.039783
GO:0043227 membrane-bounded organelle 2.09% (4/191) 2.27 0.009842 0.039896
GO:0005575 cellular_component 9.95% (19/191) 0.91 0.006549 0.040474
GO:0003723 RNA binding 3.66% (7/191) 1.52 0.011698 0.040834
GO:0008092 cytoskeletal protein binding 1.57% (3/191) 2.66 0.012277 0.042464
GO:0098772 molecular function regulator activity 1.57% (3/191) 2.65 0.012509 0.04287
GO:0048018 receptor ligand activity 0.52% (1/191) 6.23 0.013231 0.044141
GO:0030545 signaling receptor regulator activity 0.52% (1/191) 6.23 0.013231 0.044141
GO:0030546 signaling receptor activator activity 0.52% (1/191) 6.23 0.013231 0.044141
GO:0003777 microtubule motor activity 1.05% (2/191) 3.5 0.013553 0.044429
GO:0007018 microtubule-based movement 1.05% (2/191) 3.5 0.013553 0.044429
GO:0140640 catalytic activity, acting on a nucleic acid 2.09% (4/191) 2.13 0.013739 0.044651
GO:0005515 protein binding 7.33% (14/191) 0.95 0.014614 0.04669
GO:0003774 cytoskeletal motor activity 1.05% (2/191) 3.35 0.016611 0.046733
GO:0017128 phospholipid scramblase activity 0.52% (1/191) 5.91 0.016511 0.046802
GO:0140303 intramembrane lipid transporter activity 0.52% (1/191) 5.91 0.016511 0.046802
GO:0045892 negative regulation of DNA-templated transcription 0.52% (1/191) 5.91 0.016511 0.046802
GO:0051253 negative regulation of RNA metabolic process 0.52% (1/191) 5.91 0.016511 0.046802
GO:0017121 plasma membrane phospholipid scrambling 0.52% (1/191) 5.91 0.016511 0.046802
GO:1901987 regulation of cell cycle phase transition 0.52% (1/191) 5.91 0.016511 0.046802
GO:0007009 plasma membrane organization 0.52% (1/191) 5.91 0.016511 0.046802
GO:0045332 phospholipid translocation 0.52% (1/191) 5.91 0.016511 0.046802
GO:0034204 lipid translocation 0.52% (1/191) 5.91 0.016511 0.046802
GO:1902679 negative regulation of RNA biosynthetic process 0.52% (1/191) 5.91 0.016511 0.046802
GO:0097035 regulation of membrane lipid distribution 0.52% (1/191) 5.91 0.016511 0.046802
GO:1905369 endopeptidase complex 0.52% (1/191) 5.91 0.016511 0.046802
GO:1903507 negative regulation of nucleic acid-templated transcription 0.52% (1/191) 5.91 0.016511 0.046802
GO:0004749 ribose phosphate diphosphokinase activity 0.52% (1/191) 5.91 0.016511 0.046802
GO:1990904 ribonucleoprotein complex 1.05% (2/191) 3.45 0.014542 0.046857
GO:0140677 molecular function activator activity 1.05% (2/191) 3.43 0.015048 0.047673
GO:0005634 nucleus 1.57% (3/191) 2.46 0.017657 0.04931
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Actinostachys digitata HCCA Cluster_193 0.022 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_19 0.019 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_54 0.017 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_92 0.016 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_50 0.023 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_50 0.023 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_303 0.015 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_317 0.019 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_100 0.019 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_19 0.032 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_59 0.017 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_85 0.018 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_12 0.021 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_18 0.021 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_75 0.018 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_53 0.03 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_18 0.017 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_57 0.015 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_11 0.019 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_51 0.024 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_7 0.016 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_40 0.017 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_154 0.02 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_66 0.02 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_109 0.021 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_20 0.028 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_56 0.021 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_17 0.015 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_78 0.021 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_27 0.022 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_58 0.015 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_79 0.023 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_41 0.017 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_11 0.026 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_38 0.017 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_81 0.016 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_86 0.016 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_179 0.015 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_19 0.022 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_27 0.016 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_22 0.019 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_29 0.02 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_31 0.018 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_9 0.017 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_137 0.017 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_146 0.02 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_37 0.029 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_85 0.025 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_15 0.035 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_85 0.021 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_120 0.015 OrthoFinder output from all 47 species Compare
Sequences (191) (download table)

InterPro Domains

GO Terms

Family Terms