Cluster_332 Oryza sativa 100.0 % 0.004394 0.010984 Cluster_114 Oryza sativa 25.4 % 2e-06 2.1e-05 Cluster_174 Oryza sativa 30.58 % 0.0 0.0 Cluster_118 Oryza sativa 25.33 % 0.0 2e-06 Cluster_210 Oryza sativa 100.0 % 0.004394 0.008421 Cluster_372 Oryza sativa 50.0 % 0.024092 0.040153 Cluster_256 Picea abies 14.43 % 1.4e-05 0.000204 Cluster_139 Picea abies 12.5 % 0.004567 0.029226 Cluster_694 Picea abies 66.67 % 0.004035 0.011529 Cluster_520 Picea abies 40.0 % 0.012796 0.042654 Cluster_100 Picea abies 7.55 % 0.015987 0.035829 Cluster_10 Picea abies 16.1 % 0.0 0.0 Cluster_113 Picea abies 14.29 % 0.004349 0.020373 Cluster_422 Picea abies 28.57 % 0.025573 0.043474 Cluster_162 Picea abies 11.24 % 0.001732 0.008153 Cluster_110 Picea abies 43.24 % 0.0 0.0 Cluster_108 Picea abies 23.26 % 3e-06 1.1e-05 Cluster_220 Picea abies 22.67 % 0.0 0.0 Cluster_340 Picea abies 100.0 % 0.001379 0.002758 Cluster_546 Picea abies 100.0 % 0.001379 0.002508 Cluster_105 Picea abies 27.27 % 0.0 0.0 Cluster_415 Picea abies 100.0 % 0.001379 0.002758 Cluster_86 Picea abies 18.0 % 8.4e-05 0.000675 Cluster_246 Picea abies 14.89 % 0.001653 0.019284 Cluster_684 Picea abies 100.0 % 0.001379 0.002758 Cluster_161 Picea abies 18.37 % 7.1e-05 0.000448 Cluster_136 Picea abies 13.56 % 0.001471 0.010914 Cluster_71 Picea abies 10.45 % 0.012063 0.030035 Cluster_383 Picea abies 40.0 % 0.012796 0.04372 Cluster_221 Picea abies 12.31 % 0.002753 0.008693 Cluster_66 Picea abies 33.8 % 0.0 0.0 Cluster_209 Pleocnemia irregularis 18.75 % 0.000201 0.000884 Cluster_33 Pleocnemia irregularis 14.71 % 2e-06 2.5e-05 Cluster_121 Pleocnemia irregularis 12.5 % 0.002484 0.015579 Cluster_133 Pleocnemia irregularis 9.33 % 0.006126 0.045144 Aev_g22708 details
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  5. Aev_g22708

Aev_g22708 (ATEXPA4, ATEXP4,...)


Aliases : ATEXPA4, ATEXP4, EXPA4, ATHEXP ALPHA 1.6

Description : alpha-class expansin & original description: none


Gene families : OG0000032 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g22708

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00058870 ATEXPA1, EXP1,... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 OrthoFinder output from all 47 species
AT1G26770 ATEXPA10,... expansin A10 0.02 OrthoFinder output from all 47 species
Ala_g20858 ATEXPA10,... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g23921 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.26G037600.1 ATEXPA3, EXP3,... alpha-class expansin & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g37896 EXP15, ATEXPA15,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g02316 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016525001 ATEXPA4, ATEXP4,... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 OrthoFinder output from all 47 species
GSVIVT01024946001 ATEXPA4, ATEXP4,... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 OrthoFinder output from all 47 species
LOC_Os01g14660.1 ATHEXP ALPHA... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os02g16780.1 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os02g51040.1 ATEXPA10,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os04g46650.1 ATHEXP BETA 1.4,... Expansin-B5 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os06g01920.1 ATEXP7, EXPA7,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os10g39110.1 ATEXP7, EXPA7,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Mp1g22700.1 EXP15, ATEXPA15,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Pir_g45904 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06874 ATEXPA4, ATEXP4,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30591 EXPA16, ATHEXP... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004587 ATEXPA10,... alpha-class expansin & original description: CDS=259-1032 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006211 ATEXPA4, ATEXP4,... alpha-class expansin & original description: CDS=682-1482 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006536 ATEXPA10,... alpha-class expansin & original description: CDS=1521-2813 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0103.g019980 ATEXPA4, ATEXP4,... alpha-class expansin & original description: CDS=1-819 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022152 EXPB3, ATEXPB3,... not classified & original description: CDS=169-1023 0.02 OrthoFinder output from all 47 species
Sam_g15939 No alias alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g47903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50328 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e033407_P001 ATHEXP BETA 1.1,... Expansin-B11 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e038997_P001 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006082 organic acid metabolic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 183 260
IPR009009 RlpA-like_DPBB 85 172
No external refs found!