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  5. Spa_g37319

Spa_g37319 (ATIM)


Aliases : ATIM

Description : not classified & original description: none


Gene families : OG0005553 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005553_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g37319
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00055250 ATIM,... No description available 0.11 OrthoFinder output from all 47 species
Aop_g38709 ATIM not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010532 ATIM not classified & original description: CDS=124-3744 0.08 OrthoFinder output from all 47 species
Ceric.02G004400.1 ATIM, Ceric.02G004400 not classified & original description: pacid=50585680... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001154.43 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre06.g284850 ATIM No description available 0.05 OrthoFinder output from all 47 species
Dac_g31482 ATIM not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028757001 ATIM No description available 0.13 OrthoFinder output from all 47 species
Gb_19077 ATIM no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Gb_19078 ATIM no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os05g11980.1 ATIM, LOC_Os05g11980 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
MA_10435367g0010 ATIM no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_869337g0010 ATIM no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g22100.1 ATIM no hits & (original description: none) 0.18 OrthoFinder output from all 47 species
Nbi_g08196 ATIM not classified & original description: none 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000460 ATIM not classified & original description: CDS=1-3306 0.04 OrthoFinder output from all 47 species
Sam_g50676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g007800.3.1 ATIM, Solyc03g007800 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Zm00001e032472_P001 ATIM, Zm00001e032472 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
CC GO:0000796 condensin complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018142 protein-DNA covalent cross-linking IEP HCCA
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR006906 Timeless_N 24 283
No external refs found!