Als_g54567 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species Aob_g27300 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species Aop_g29464 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species Aop_g31791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species Azfi_s0004.g008663 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2121 0.03 OrthoFinder output from all 47 species Azfi_s0084.g038899 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2004 0.04 OrthoFinder output from all 47 species Azfi_s0131.g049164 No alias not classified & original description: CDS=1-2763 0.04 OrthoFinder output from all 47 species Azfi_s0144.g051561 No alias not classified & original description: CDS=1-3123 0.03 OrthoFinder output from all 47 species Azfi_s0250.g060258 No alias not classified & original description: CDS=1-1893 0.02 OrthoFinder output from all 47 species Azfi_s0254.g060427 No alias not classified & original description: CDS=1-2130 0.04 OrthoFinder output from all 47 species Azfi_s0254.g060453 No alias not classified & original description: CDS=1-2166 0.04 OrthoFinder output from all 47 species Azfi_s0345.g065805 No alias not classified & original description: CDS=1-2679 0.02 OrthoFinder output from all 47 species Azfi_s0469.g072874 CRR22 not classified & original description: CDS=1-1206 0.02 OrthoFinder output from all 47 species Azfi_s1399.g102576 No alias not classified & original description: CDS=1-1533 0.03 OrthoFinder output from all 47 species Azfi_s1399.g102577 No alias not classified & original description: CDS=1-951 0.02 OrthoFinder output from all 47 species Cba_g04021 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species Cba_g05283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species Cba_g07278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species Cba_g07309 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species Cba_g07445 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species Cba_g07596 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species Cba_g07775 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species Cba_g19547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species Cba_g19836 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species Cba_g20819 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species Cba_g20846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species Cba_g20854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species Cba_g20860 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species Cba_g20866 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species Cba_g30003 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species Cba_g30010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species Cba_g67030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species Cba_g67235 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species Cba_g67249 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species Cba_g67756 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species Cba_g67874 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species Cba_g67887 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species Spa_g30536 details

Spa_g30536


Description : component *(RPP1) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000349 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000349_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g30536

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00113490 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AMTR_s00100p00050800 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AT1G01100 No alias 60S acidic ribosomal protein family 0.09 OrthoFinder output from all 47 species
AT4G00810 No alias 60S acidic ribosomal protein family 0.07 OrthoFinder output from all 47 species
AT5G47700 No alias 60S acidic ribosomal protein family 0.05 OrthoFinder output from all 47 species
Adi_g041465 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g068300 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Ala_g09775 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ala_g32202 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Als_g04640 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g13340 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aob_g42636 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g10155 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g22529 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g46228 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aspi01Gene20688.t1 Aspi01Gene20688 component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000668 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Azfi_s0068.g036426 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cba_g28590 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g54064 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g64518 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g79064 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.01G125200.1 Ceric.01G125200 component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ceric.21G004600.1 Ceric.21G004600 component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Cre17.g738300 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
Dac_g08982 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dac_g30739 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g11086 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g11087 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g23416 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g28301 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dde_g06728 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ehy_g29663 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
GSVIVT01019679001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
GSVIVT01027436001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01038637001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
Gb_21696 No alias component RPP1 of LSU proteome component 0.06 OrthoFinder output from all 47 species
LOC_Os08g02340.1 LOC_Os08g02340 component RPP1 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Len_g00084 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Len_g01989 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g26215 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_10430200g0010 No alias component RPP1 of LSU proteome component 0.06 OrthoFinder output from all 47 species
MA_90134g0010 No alias component RPP1 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Mp3g02890.1 No alias component RPP1 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Mp6g11950.1 No alias component RPP1 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Nbi_g27328 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ore_g19945 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g04407 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g14549 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Pp3c1_36220V3.1 Pp3c1_36220 60S acidic ribosomal protein family 0.08 OrthoFinder output from all 47 species
Pp3c20_2800V3.1 Pp3c20_2800 60S acidic ribosomal protein family 0.07 OrthoFinder output from all 47 species
Pp3c23_18100V3.1 Pp3c23_18100 60S acidic ribosomal protein family 0.05 OrthoFinder output from all 47 species
Pp3c8_22380V3.1 Pp3c8_22380 60S acidic ribosomal protein family 0.03 OrthoFinder output from all 47 species
Ppi_g07968 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g20755 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g26274 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g44435 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g44445 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g45900 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g47755 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo133023 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Solyc01g006160.3.1 Solyc01g006160 component RPP1 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc01g016470.3.1 Solyc01g016470 component RPP1 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Solyc01g104370.4.1 Solyc01g104370 component RPP1 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Spa_g07269 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Tin_g00286 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Tin_g02285 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Zm00001e021844_P001 Zm00001e021844 component RPP1 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e029197_P001 Zm00001e029197 component RPP1 of LSU proteome component 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
CC GO:0016469 proton-transporting two-sector ATPase complex IEP HCCA
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033176 proton-transporting V-type ATPase complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
CC GO:0034998 oligosaccharyltransferase I complex IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!