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  5. Spa_g30421

Spa_g30421


Description : not classified & original description: none


Gene families : OG0005251 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005251_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g30421

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene02208.t1 Aspi01Gene02208 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02209.t1 Aspi01Gene02209 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.32G028400.1 Ceric.32G028400 not classified & original description: pacid=50598293... 0.05 OrthoFinder output from all 47 species
Dac_g07789 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g13030 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g21957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp2g12550.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ppi_g29299 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0161.g023940 No alias not classified & original description: CDS=1-2634 0.04 OrthoFinder output from all 47 species
Sam_g19465 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g008760.4.1 Solyc07g008760 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019734 TPR_repeat 652 682
No external refs found!