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  5. Spa_g29541

Spa_g29541 (ARF16)


Aliases : ARF16

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g29541

Target Alias Description ECC score Gene Family Method Actions
AT1G35540 ARF14 auxin response factor 14 0.03 OrthoFinder output from all 47 species
AT5G20730 TIR5, MSG1,... Transcriptional factor B3 family protein /... 0.03 OrthoFinder output from all 47 species
AT5G60450 ARF4 auxin response factor 4 0.03 OrthoFinder output from all 47 species
Adi_g011925 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098002 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11834 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06737 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07961 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12632 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12700 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17078 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18587 ARF16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01025691001 ARF16 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
GSVIVT01037136001 ARF1 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Len_g47059 ARF6 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05590 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g07070.1 ARF10 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Pir_g30468 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g04517 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12994 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018261 TIR5, MSG1,... not classified & original description: CDS=484-2670 0.03 OrthoFinder output from all 47 species
Sam_g40540 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47786 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e036249_P003 ARF19, IAA22,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 289 372
IPR003340 B3_DNA-bd 129 230
No external refs found!