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  5. Aev_g21731

Aev_g21731


Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g21731

Target Alias Description ECC score Gene Family Method Actions
AT1G55630 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Dde_g02250 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g113750.3.1 OTP43, Solyc03g113750 OTP43 mitochondrial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e000718_P001 Zm00001e000718 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 656 703
IPR002885 Pentatricopeptide_repeat 444 489
IPR002885 Pentatricopeptide_repeat 339 388
IPR002885 Pentatricopeptide_repeat 549 597
IPR002885 Pentatricopeptide_repeat 724 771
IPR002885 Pentatricopeptide_repeat 234 281
IPR002885 Pentatricopeptide_repeat 153 211
IPR002885 Pentatricopeptide_repeat 792 823
IPR002885 Pentatricopeptide_repeat 414 437
IPR002885 Pentatricopeptide_repeat 510 543
IPR002885 Pentatricopeptide_repeat 615 647
IPR002885 Pentatricopeptide_repeat 301 332
No external refs found!