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  5. Spa_g26205

Spa_g26205 (LINC2)


Aliases : LINC2

Description : nuclear lamina lamin-like protein *(CRWN) & original description: none


Gene families : OG0002096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002096_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g26205
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AT5G65780 ATBCAT-5 branched-chain amino acid aminotransferase 5 /... 0.03 OrthoFinder output from all 47 species
Adi_g018491 LINC3 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Aev_g06792 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Ala_g08422 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.06 OrthoFinder output from all 47 species
Als_g03902 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Als_g29067 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Aob_g07969 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene48756.t1 LINC2, Aspi01Gene48756 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g010369 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Ceric.31G070800.1 LINC2, Ceric.31G070800 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Dac_g16168 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g09858 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.09 OrthoFinder output from all 47 species
Ehy_g13504 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01011972001 LINC3 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.06 OrthoFinder output from all 47 species
GSVIVT01031076001 LINC1 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.07 OrthoFinder output from all 47 species
LOC_Os01g56140.1 LINC4, LOC_Os01g56140 CRWN nuclear lamina lamin-like protein 0.04 OrthoFinder output from all 47 species
LOC_Os02g48010.1 LINC1, LOC_Os02g48010 CRWN nuclear lamina lamin-like protein 0.02 OrthoFinder output from all 47 species
Len_g57295 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26620 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Msp_g42740 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Nbi_g03849 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.06 OrthoFinder output from all 47 species
Nbi_g10182 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Ore_g11685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28255 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Pnu_g08172 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g14315 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Sam_g14580 No alias nuclear lamina lamin-like protein *(CRWN) & original... 0.06 OrthoFinder output from all 47 species
Solyc02g089800.3.1 LINC1, Solyc02g089800 CRWN nuclear lamina lamin-like protein 0.05 OrthoFinder output from all 47 species
Tin_g01292 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!