Spa_g26124 (UBP23)

Aliases : UBP23

Description : deubiquitinase *(UBP23) & original description: none

Gene families : OG0000320 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000320_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g26124

Target	Alias	Description	ECC score	Gene Family Method
AT4G24560	UBP16	ubiquitin-specific protease 16	0.04	OrthoFinder output from all 47 species
Adi_g013898	UBP25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g060737	UBP23	deubiquitinase *(UBP23) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g08916	UBP23	deubiquitinase *(UBP23) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g19936	UBP25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g04917	UBP25	deubiquitinase *(UBP25) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.15G035800.1	UBP19, Ceric.15G035800	deubiquitinase *(UBP15-21) & original description:...	0.03	OrthoFinder output from all 47 species
Cre14.g629300	UBP23	Protein degradation.peptidase families.cysteine-type...	0.01	OrthoFinder output from all 47 species
Dac_g23037	UBP23	deubiquitinase *(UBP23) & original description: none	0.08	OrthoFinder output from all 47 species
Dcu_g09670	UBP25	deubiquitinase *(UBP25) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g03370	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01000696001	UBP15	Protein degradation.peptidase families.cysteine-type...	0.03	OrthoFinder output from all 47 species
GSVIVT01001911001	No alias	No description available	0.03	OrthoFinder output from all 47 species
GSVIVT01038082001	UBP25	Protein degradation.peptidase families.cysteine-type...	0.02	OrthoFinder output from all 47 species
LOC_Os02g14730.1	UBP15, LOC_Os02g14730	deubiquitinase (UBP15-21)	0.02	OrthoFinder output from all 47 species
LOC_Os06g44380.1	UBP19, LOC_Os06g44380	deubiquitinase (UBP15-21)	0.04	OrthoFinder output from all 47 species
LOC_Os09g28940.1	UBP17, LOC_Os09g28940	deubiquitinase (UBP15-21)	0.02	OrthoFinder output from all 47 species
Len_g45877	UBP23	deubiquitinase *(UBP23) & original description: none	0.04	OrthoFinder output from all 47 species
MA_10429414g0020	UBP18	deubiquitinase (UBP15-21)	0.03	OrthoFinder output from all 47 species
MA_53569g0010	UBP23	deubiquitinase (UBP23)	0.02	OrthoFinder output from all 47 species
Mp1g03220.1	UBP25	Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Mp2g05560.1	UBP18	deubiquitinase (UBP15-21)	0.06	OrthoFinder output from all 47 species
Mp3g16110.1	UBP23	deubiquitinase (UBP23)	0.02	OrthoFinder output from all 47 species
Ore_g09620	UBP18	deubiquitinase *(UBP15-21) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g05280	UBP25	deubiquitinase *(UBP25) & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g15722	UBP19	deubiquitinase *(UBP15-21) & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g20105	UBP19	deubiquitinase *(UBP15-21) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g50169	No alias	deubiquitinase *(UBP15-21) & original description: none	0.04	OrthoFinder output from all 47 species
Solyc04g076210.3.1	UBP16, Solyc04g076210	deubiquitinase (UBP15-21)	0.03	OrthoFinder output from all 47 species
Solyc07g005530.4.1	UBP23, Solyc07g005530	deubiquitinase (UBP23)	0.02	OrthoFinder output from all 47 species
Zm00001e023273_P001	UBP21, Zm00001e023273	Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e027381_P003	UBP25, Zm00001e027381	deubiquitinase (UBP25)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004843	cysteine-type deubiquitinase activity	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein peptidase activity	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	deubiquitinase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000439	transcription factor TFIIH core complex	IEP	HCCA
MF	GO:0001671	ATPase activator activity	IEP	HCCA
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006289	nucleotide-excision repair	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
CC	GO:0033588	elongator holoenzyme complex	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001394	Peptidase_C19_UCH	91	387

External Links

No external refs found!

Spa_g26124 (UBP23)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation