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  5. Spa_g25528

Spa_g25528


Description : component *(uL5) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001936_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g25528
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00200160 RPL16A,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
AMTR_s00025p00203150 RPL16A,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
AT2G42740 RPL16A ribosomal protein large subunit 16A 0.06 OrthoFinder output from all 47 species
AT3G58700 No alias Ribosomal L5P family protein 0.09 OrthoFinder output from all 47 species
AT4G18730 RPL16B ribosomal protein L16B 0.2 OrthoFinder output from all 47 species
AT5G45775 No alias Ribosomal L5P family protein 0.19 OrthoFinder output from all 47 species
Adi_g004325 RPL16A component *(uL5) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Adi_g080914 RPL16A component *(uL5) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Adi_g080915 RPL16A component *(uL5) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ala_g17681 No alias component *(uL5) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ala_g30852 RPL16A component *(uL5) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Aop_g30844 No alias component *(uL5) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g70327 RPL16A component *(uL5) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Azfi_s0350.g066549 RPL16A component *(uL5) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Cba_g07180 RPL16A component *(uL5) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g11185 RPL16A component *(uL5) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.02G112300.1 RPL16A, Ceric.02G112300 component *(uL5) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Ceric.39G033200.1 RPL16A, Ceric.39G033200 component *(uL5) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020610.38 RPL16A Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
Cre01.g027000 RPL16A Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder output from all 47 species
Dac_g00272 RPL16A component *(uL5) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dac_g32571 RPL16A component *(uL5) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dcu_g08602 RPL16A component *(uL5) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Dcu_g27669 RPL16A component *(uL5) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
GSVIVT01020743001 RPL16A Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
GSVIVT01021244001 RPL16A Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
Gb_08489 No alias component RPL11 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Gb_08546 RPL16A component RPL11 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Gb_22357 RPL16A component RPL11 of LSU proteome component 0.09 OrthoFinder output from all 47 species
LOC_Os01g10820.1 RPL16A, LOC_Os01g10820 component RPL11 of LSU proteome component 0.15 OrthoFinder output from all 47 species
LOC_Os05g11710.1 RPL16A, LOC_Os05g11710 component RPL11 of LSU proteome component 0.17 OrthoFinder output from all 47 species
LOC_Os06g35730.1 RPL16A, LOC_Os06g35730 component RPL11 of LSU proteome component 0.17 OrthoFinder output from all 47 species
MA_57785g0010 RPL16A 60S ribosomal protein L11-1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_74060g0010 RPL16A component RPL11 of LSU proteome component 0.04 OrthoFinder output from all 47 species
MA_86694g0010 RPL16A component RPL11 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Mp2g24740.1 RPL16A component RPL11 of LSU proteome component 0.2 OrthoFinder output from all 47 species
Mp6g18870.1 RPL16A component RPL11 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Msp_g09123 No alias component *(uL5) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Msp_g34305 No alias component *(uL5) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c2_33280V3.1 RPL16A, Pp3c2_33280 ribosomal protein L16B 0.02 OrthoFinder output from all 47 species
Pp3c5_3870V3.1 RPL16A, Pp3c5_3870 Ribosomal L5P family protein 0.05 OrthoFinder output from all 47 species
Pp3c7_20160V3.1 RPL16A, Pp3c7_20160 ribosomal protein large subunit 16A 0.12 OrthoFinder output from all 47 species
Ppi_g63573 RPL16A component *(uL5) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016923 RPL16A component *(uL5) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g17383 No alias component *(uL5) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Sam_g21398 No alias component *(uL5) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Smo444767 RPL16A Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Solyc02g086240.3.1 RPL16A, Solyc02g086240 component RPL11 of LSU proteome component 0.2 OrthoFinder output from all 47 species
Solyc07g055230.4.1 RPL16A, Solyc07g055230 component RPL11 of LSU proteome component 0.17 OrthoFinder output from all 47 species
Solyc10g007980.3.1 RPL16A, Solyc10g007980 component RPL11 of LSU proteome component 0.17 OrthoFinder output from all 47 species
Solyc12g010930.2.1 RPL16A, Solyc12g010930 component RPL11 of LSU proteome component 0.2 OrthoFinder output from all 47 species
Tin_g02344 RPL16A component *(uL5) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Zm00001e024913_P001 RPL16A, Zm00001e024913 component RPL11 of LSU proteome component 0.23 OrthoFinder output from all 47 species
Zm00001e026886_P003 RPL16A, Zm00001e026886 component RPL11 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Zm00001e037255_P001 RPL16A, Zm00001e037255 component RPL11 of LSU proteome component 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR031310 Ribosomal_L5_N 10 63
IPR031309 Ribosomal_L5_C 67 165
No external refs found!