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  5. Spa_g25298

Spa_g25298 (PUM3, APUM3)


Aliases : PUM3, APUM3

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g25298

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0239.g059655 PUM1, APUM1 not classified & original description: CDS=1-3594 0.03 OrthoFinder output from all 47 species
Cba_g37857 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g27807 PUM3, APUM3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g48916 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02392 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12747 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g076340.3.1 APUM2, PUM2,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Tin_g15133 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e027653_P001 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 1 31
IPR001313 Pumilio_RNA-bd_rpt 42 72
No external refs found!