Spa_g24729 (CHR24)

Aliases : CHR24

Description : chromatin remodeling factor *(ERCC6) & original description: none

Gene families : OG0005354 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005354_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g24729
Cluster	HCCA: Cluster_14

Target	Alias	Description	ECC score	Gene Family Method
AT5G63950	CHR24	chromatin remodeling 24	0.03	OrthoFinder output from all 47 species
Aop_g13293	CHR24	chromatin remodeling factor *(ERCC6) & original description: none	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001292.5	CHR24	Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Dcu_g19620	CHR24	chromatin remodeling factor *(ERCC6) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g16240	CHR24	chromatin remodeling factor *(ERCC6) & original description: none	0.02	OrthoFinder output from all 47 species
Gb_17075	CHR24	chromatin remodeling factor (ERCC6)	0.03	OrthoFinder output from all 47 species
LOC_Os04g59620.1	CHR24, LOC_Os04g59620	chromatin remodeling factor (ERCC6)	0.03	OrthoFinder output from all 47 species
LOC_Os04g59624.2	CHR24, LOC_Os04g59624	chromatin remodeling factor (ERCC6)	0.05	OrthoFinder output from all 47 species
MA_18372g0010	CHR24	Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Mp1g29760.1	CHR24	chromatin remodeling factor (ERCC6)	0.05	OrthoFinder output from all 47 species
Msp_g36236	CHR24	chromatin remodeling factor *(ERCC6) & original description: none	0.06	OrthoFinder output from all 47 species
Nbi_g03168	CHR24	chromatin remodeling factor *(ERCC6) & original description: none	0.04	OrthoFinder output from all 47 species
Solyc01g068280.3.1	CHR24, Solyc01g068280	chromatin remodeling factor (ERCC6)	0.05	OrthoFinder output from all 47 species
Tin_g19329	CHR24	chromaTin remodeling factor *(ERCC6) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	624	736
IPR000330	SNF2_N	280	572

External Links

No external refs found!

Spa_g24729 (CHR24)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation