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  5. Spa_g22309

Spa_g22309


Description : mRNA stability factor *(CRP1) & original description: none


Gene families : OG0007882 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007882_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g22309

Target Alias Description ECC score Gene Family Method Actions
Ala_g22401 No alias mRNA stability factor *(CRP1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10113.t1 Aspi01Gene10113 mRNA stability factor *(CRP1) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10781 No alias mRNA stability factor *(CRP1) & original description: none 0.06 OrthoFinder output from all 47 species
Gb_11328 No alias plastidial mRNA processing factor (CRP1) 0.02 OrthoFinder output from all 47 species
Pir_g10878 No alias mRNA stability factor *(CRP1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52447 No alias mRNA stability factor *(CRP1) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 727 764
IPR002885 Pentatricopeptide_repeat 552 599
IPR002885 Pentatricopeptide_repeat 486 515
IPR002885 Pentatricopeptide_repeat 661 690
IPR002885 Pentatricopeptide_repeat 697 724
IPR002885 Pentatricopeptide_repeat 521 550
IPR002885 Pentatricopeptide_repeat 275 304
IPR033443 PPR_long 311 483
IPR002885 Pentatricopeptide_repeat 620 651
No external refs found!