Spa_g22183 (CRF4)

Aliases : CRF4

Description : subgroup ERF-VI transcription factor & original description: none

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g22183
Cluster	HCCA: Cluster_56

Target	Alias	Description	ECC score	Gene Family Method
Adi_g009891	DREB2A, DREB2	subgroup ERF-IV/DREB2 transcription factor & original...	0.02	OrthoFinder output from all 47 species
Adi_g016418	RAP2.2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g020058	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g37025	DEAR3	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.03	OrthoFinder output from all 47 species
Als_g37382	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g22458	HRE2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene23568.t1	CRF3, Aspi01Gene23568	subgroup ERF-VI transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.19G006100.1	HRE2, Ceric.19G006100	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Cre14.g620500	ESR1, DRN	No description available	0.03	OrthoFinder output from all 47 species
Dac_g15005	CRF3	subgroup ERF-VI transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g07677	RAP2.2	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Dcu_g15103	TINY2	subgroup ERF-III transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ehy_g00325	ATERF-9, ERF9, ATERF9	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g00819	ERF1, ATERF1	subgroup ERF-IX transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g15134	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
LOC_Os05g27930.1	DREB2A, DREB2,...	transcription factor (DREB)	0.04	OrthoFinder output from all 47 species
MA_26547g0010	CRF3	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Nbi_g11606	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.04	OrthoFinder output from all 47 species
Ore_g02257	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g09597	CRF4	subgroup ERF-VI transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g13205	No alias	subgroup ERF-VI transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g090370.3.1	ATERF13, ERF13,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Tin_g06782	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Zm00001e023686_P001	Zm00001e023686	transcription factor (ERF)	0.01	OrthoFinder output from all 47 species
Zm00001e034242_P001	RAP2.12, Zm00001e034242	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	150	199

External Links

No external refs found!

Spa_g22183 (CRF4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation